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Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma
Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in low grade glioma (LGG) at present....
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9633682/ https://www.ncbi.nlm.nih.gov/pubmed/36338998 http://dx.doi.org/10.3389/fgene.2022.975419 |
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author | Xu, Yifan Wang, Chao Li, Shifang Zhou, Han Feng, Yugong |
author_facet | Xu, Yifan Wang, Chao Li, Shifang Zhou, Han Feng, Yugong |
author_sort | Xu, Yifan |
collection | PubMed |
description | Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in low grade glioma (LGG) at present. In this study, data on low grade glioma patients were downloaded from the TCGA database. We screened the genes related to cuproptosis from the published papers and confirmed the lncRNAs related to them. We applied univariate/multivariate, and LASSO regression algorithms, finally identified 11 lncRNAs for constructing prognosis prediction models, and constructed a risk scoring model. The reliability and validity test of the model indicated that the model could well distinguish the prognosis and survival of LGG patients. Furthermore, the analyses of immunotherapy, immune microenvironment, as well as functional enrichment were also performed. Finally, we verified the expression of these six prognostic key lncRNAs using real-time polymerase chain reaction (RT-PCR). In conclusion, this study is the first analysis based on cuproptosis-related lncRNAs in LGG and aims to open up new directions for LGG therapy. |
format | Online Article Text |
id | pubmed-9633682 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96336822022-11-05 Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma Xu, Yifan Wang, Chao Li, Shifang Zhou, Han Feng, Yugong Front Genet Genetics Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in low grade glioma (LGG) at present. In this study, data on low grade glioma patients were downloaded from the TCGA database. We screened the genes related to cuproptosis from the published papers and confirmed the lncRNAs related to them. We applied univariate/multivariate, and LASSO regression algorithms, finally identified 11 lncRNAs for constructing prognosis prediction models, and constructed a risk scoring model. The reliability and validity test of the model indicated that the model could well distinguish the prognosis and survival of LGG patients. Furthermore, the analyses of immunotherapy, immune microenvironment, as well as functional enrichment were also performed. Finally, we verified the expression of these six prognostic key lncRNAs using real-time polymerase chain reaction (RT-PCR). In conclusion, this study is the first analysis based on cuproptosis-related lncRNAs in LGG and aims to open up new directions for LGG therapy. Frontiers Media S.A. 2022-10-21 /pmc/articles/PMC9633682/ /pubmed/36338998 http://dx.doi.org/10.3389/fgene.2022.975419 Text en Copyright © 2022 Xu, Wang, Li, Zhou and Feng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Xu, Yifan Wang, Chao Li, Shifang Zhou, Han Feng, Yugong Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
title | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
title_full | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
title_fullStr | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
title_full_unstemmed | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
title_short | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
title_sort | prognosis and immune response of a cuproptosis-related lncrna signature in low grade glioma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9633682/ https://www.ncbi.nlm.nih.gov/pubmed/36338998 http://dx.doi.org/10.3389/fgene.2022.975419 |
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