Cargando…

Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma

Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in low grade glioma (LGG) at present....

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Yifan, Wang, Chao, Li, Shifang, Zhou, Han, Feng, Yugong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9633682/
https://www.ncbi.nlm.nih.gov/pubmed/36338998
http://dx.doi.org/10.3389/fgene.2022.975419
_version_ 1784824291165995008
author Xu, Yifan
Wang, Chao
Li, Shifang
Zhou, Han
Feng, Yugong
author_facet Xu, Yifan
Wang, Chao
Li, Shifang
Zhou, Han
Feng, Yugong
author_sort Xu, Yifan
collection PubMed
description Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in low grade glioma (LGG) at present. In this study, data on low grade glioma patients were downloaded from the TCGA database. We screened the genes related to cuproptosis from the published papers and confirmed the lncRNAs related to them. We applied univariate/multivariate, and LASSO regression algorithms, finally identified 11 lncRNAs for constructing prognosis prediction models, and constructed a risk scoring model. The reliability and validity test of the model indicated that the model could well distinguish the prognosis and survival of LGG patients. Furthermore, the analyses of immunotherapy, immune microenvironment, as well as functional enrichment were also performed. Finally, we verified the expression of these six prognostic key lncRNAs using real-time polymerase chain reaction (RT-PCR). In conclusion, this study is the first analysis based on cuproptosis-related lncRNAs in LGG and aims to open up new directions for LGG therapy.
format Online
Article
Text
id pubmed-9633682
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-96336822022-11-05 Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma Xu, Yifan Wang, Chao Li, Shifang Zhou, Han Feng, Yugong Front Genet Genetics Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in low grade glioma (LGG) at present. In this study, data on low grade glioma patients were downloaded from the TCGA database. We screened the genes related to cuproptosis from the published papers and confirmed the lncRNAs related to them. We applied univariate/multivariate, and LASSO regression algorithms, finally identified 11 lncRNAs for constructing prognosis prediction models, and constructed a risk scoring model. The reliability and validity test of the model indicated that the model could well distinguish the prognosis and survival of LGG patients. Furthermore, the analyses of immunotherapy, immune microenvironment, as well as functional enrichment were also performed. Finally, we verified the expression of these six prognostic key lncRNAs using real-time polymerase chain reaction (RT-PCR). In conclusion, this study is the first analysis based on cuproptosis-related lncRNAs in LGG and aims to open up new directions for LGG therapy. Frontiers Media S.A. 2022-10-21 /pmc/articles/PMC9633682/ /pubmed/36338998 http://dx.doi.org/10.3389/fgene.2022.975419 Text en Copyright © 2022 Xu, Wang, Li, Zhou and Feng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Xu, Yifan
Wang, Chao
Li, Shifang
Zhou, Han
Feng, Yugong
Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma
title Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma
title_full Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma
title_fullStr Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma
title_full_unstemmed Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma
title_short Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma
title_sort prognosis and immune response of a cuproptosis-related lncrna signature in low grade glioma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9633682/
https://www.ncbi.nlm.nih.gov/pubmed/36338998
http://dx.doi.org/10.3389/fgene.2022.975419
work_keys_str_mv AT xuyifan prognosisandimmuneresponseofacuproptosisrelatedlncrnasignatureinlowgradeglioma
AT wangchao prognosisandimmuneresponseofacuproptosisrelatedlncrnasignatureinlowgradeglioma
AT lishifang prognosisandimmuneresponseofacuproptosisrelatedlncrnasignatureinlowgradeglioma
AT zhouhan prognosisandimmuneresponseofacuproptosisrelatedlncrnasignatureinlowgradeglioma
AT fengyugong prognosisandimmuneresponseofacuproptosisrelatedlncrnasignatureinlowgradeglioma