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Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence
Predicting colorectal cancer recurrence after tumor resection is crucial because it promotes the administration of proper subsequent treatment or management to improve the clinical outcomes of patients. Several clinical or molecular factors, including tumor stage, metastasis, and microsatellite inst...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9636036/ https://www.ncbi.nlm.nih.gov/pubmed/36345336 http://dx.doi.org/10.1016/j.isci.2022.105392 |
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author | Kim, Donghyo Kim, Jinho Lee, Juhun Han, Seong Kyu Lee, Kwanghwan Kong, JungHo Kim, Yeon Jeong Lee, Woo Yong Yun, Seong Hyeon Kim, Hee Cheol Hong, Hye Kyung Cho, Yong Beom Park, Donghyun Kim, Sanguk |
author_facet | Kim, Donghyo Kim, Jinho Lee, Juhun Han, Seong Kyu Lee, Kwanghwan Kong, JungHo Kim, Yeon Jeong Lee, Woo Yong Yun, Seong Hyeon Kim, Hee Cheol Hong, Hye Kyung Cho, Yong Beom Park, Donghyun Kim, Sanguk |
author_sort | Kim, Donghyo |
collection | PubMed |
description | Predicting colorectal cancer recurrence after tumor resection is crucial because it promotes the administration of proper subsequent treatment or management to improve the clinical outcomes of patients. Several clinical or molecular factors, including tumor stage, metastasis, and microsatellite instability status, have been used to assess the risk of recurrence, although their predictive ability is limited. Here, we predicted colorectal cancer recurrence based on cellular deconvolution of bulk tumors into two distinct immune cell states: cancer-associated (tumor-infiltrating immune cell-like) and noncancer-associated (peripheral blood mononuclear cell-like). Prediction model performed significantly better when immune cells were deconvoluted into two states rather than a single state, suggesting that the difference in cancer recurrence was better explained by distinct states of immune cells. It indicates the importance of distinguishing immune cell states using cellular deconvolution to improve the prediction of colorectal cancer recurrence. |
format | Online Article Text |
id | pubmed-9636036 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-96360362022-11-06 Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence Kim, Donghyo Kim, Jinho Lee, Juhun Han, Seong Kyu Lee, Kwanghwan Kong, JungHo Kim, Yeon Jeong Lee, Woo Yong Yun, Seong Hyeon Kim, Hee Cheol Hong, Hye Kyung Cho, Yong Beom Park, Donghyun Kim, Sanguk iScience Article Predicting colorectal cancer recurrence after tumor resection is crucial because it promotes the administration of proper subsequent treatment or management to improve the clinical outcomes of patients. Several clinical or molecular factors, including tumor stage, metastasis, and microsatellite instability status, have been used to assess the risk of recurrence, although their predictive ability is limited. Here, we predicted colorectal cancer recurrence based on cellular deconvolution of bulk tumors into two distinct immune cell states: cancer-associated (tumor-infiltrating immune cell-like) and noncancer-associated (peripheral blood mononuclear cell-like). Prediction model performed significantly better when immune cells were deconvoluted into two states rather than a single state, suggesting that the difference in cancer recurrence was better explained by distinct states of immune cells. It indicates the importance of distinguishing immune cell states using cellular deconvolution to improve the prediction of colorectal cancer recurrence. Elsevier 2022-10-17 /pmc/articles/PMC9636036/ /pubmed/36345336 http://dx.doi.org/10.1016/j.isci.2022.105392 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kim, Donghyo Kim, Jinho Lee, Juhun Han, Seong Kyu Lee, Kwanghwan Kong, JungHo Kim, Yeon Jeong Lee, Woo Yong Yun, Seong Hyeon Kim, Hee Cheol Hong, Hye Kyung Cho, Yong Beom Park, Donghyun Kim, Sanguk Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence |
title | Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence |
title_full | Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence |
title_fullStr | Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence |
title_full_unstemmed | Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence |
title_short | Deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence |
title_sort | deconvolution of bulk tumors into distinct immune cell states predicts colorectal cancer recurrence |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9636036/ https://www.ncbi.nlm.nih.gov/pubmed/36345336 http://dx.doi.org/10.1016/j.isci.2022.105392 |
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