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Deciphering the role of precursor miR-12136 and miR-8485 in the progression of intellectual disability (ID)

The short, non-coding RNAs known as miRNA modulate the expression of human protein-coding genes. About 90 % of genes in humans are controlled by the expression of miRNA. The dysfunction of these miRNA target genes leads to many human diseases, including neurodevelopmental disorders as well. Intellec...

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Detalles Bibliográficos
Autores principales: Garg, Prekshi, Jamal, Farrukh, Srivastava, Prachi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9636553/
https://www.ncbi.nlm.nih.gov/pubmed/36345471
http://dx.doi.org/10.1016/j.ibneur.2022.10.005
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author Garg, Prekshi
Jamal, Farrukh
Srivastava, Prachi
author_facet Garg, Prekshi
Jamal, Farrukh
Srivastava, Prachi
author_sort Garg, Prekshi
collection PubMed
description The short, non-coding RNAs known as miRNA modulate the expression of human protein-coding genes. About 90 % of genes in humans are controlled by the expression of miRNA. The dysfunction of these miRNA target genes leads to many human diseases, including neurodevelopmental disorders as well. Intellectual disability (ID) is a neurodevelopmental disorder that is characterized by adaptive behavior and intellectual functioning which includes logical reasoning, ability in learning, practical intelligence, and verbal skills. Identification of miRNA involved in ID and their associated target genes can help in the identification of diagnostic biomarkers related to ID at a very early age. The present study is an attempt to identify miRNA and their associated target genes that play an important role in the development of intellectual disability patients through the meta-analysis of available transcriptome data. A total of 6 transcriptomic studies were retrieved from NCBI and were subjected to quality check and trimming before alignment. The normalization and identification of differentially expressed miRNA were carried out using the EdgeR package of R studio. Further, the gene targets of downregulated miRNA were identified using miRDB. The system biology approaches were also applied to the study to identify the hub target genes and the diseases associated with main miRNAs.
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spelling pubmed-96365532022-11-06 Deciphering the role of precursor miR-12136 and miR-8485 in the progression of intellectual disability (ID) Garg, Prekshi Jamal, Farrukh Srivastava, Prachi IBRO Neurosci Rep Research Paper The short, non-coding RNAs known as miRNA modulate the expression of human protein-coding genes. About 90 % of genes in humans are controlled by the expression of miRNA. The dysfunction of these miRNA target genes leads to many human diseases, including neurodevelopmental disorders as well. Intellectual disability (ID) is a neurodevelopmental disorder that is characterized by adaptive behavior and intellectual functioning which includes logical reasoning, ability in learning, practical intelligence, and verbal skills. Identification of miRNA involved in ID and their associated target genes can help in the identification of diagnostic biomarkers related to ID at a very early age. The present study is an attempt to identify miRNA and their associated target genes that play an important role in the development of intellectual disability patients through the meta-analysis of available transcriptome data. A total of 6 transcriptomic studies were retrieved from NCBI and were subjected to quality check and trimming before alignment. The normalization and identification of differentially expressed miRNA were carried out using the EdgeR package of R studio. Further, the gene targets of downregulated miRNA were identified using miRDB. The system biology approaches were also applied to the study to identify the hub target genes and the diseases associated with main miRNAs. Elsevier 2022-10-21 /pmc/articles/PMC9636553/ /pubmed/36345471 http://dx.doi.org/10.1016/j.ibneur.2022.10.005 Text en © 2022 Published by Elsevier Ltd on behalf of International Brain Research Organization. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Paper
Garg, Prekshi
Jamal, Farrukh
Srivastava, Prachi
Deciphering the role of precursor miR-12136 and miR-8485 in the progression of intellectual disability (ID)
title Deciphering the role of precursor miR-12136 and miR-8485 in the progression of intellectual disability (ID)
title_full Deciphering the role of precursor miR-12136 and miR-8485 in the progression of intellectual disability (ID)
title_fullStr Deciphering the role of precursor miR-12136 and miR-8485 in the progression of intellectual disability (ID)
title_full_unstemmed Deciphering the role of precursor miR-12136 and miR-8485 in the progression of intellectual disability (ID)
title_short Deciphering the role of precursor miR-12136 and miR-8485 in the progression of intellectual disability (ID)
title_sort deciphering the role of precursor mir-12136 and mir-8485 in the progression of intellectual disability (id)
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9636553/
https://www.ncbi.nlm.nih.gov/pubmed/36345471
http://dx.doi.org/10.1016/j.ibneur.2022.10.005
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