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Machine Learning Successfully Detects Patients with COVID-19 Prior to PCR Results and Predicts Their Survival Based on Standard Laboratory Parameters in an Observational Study

INTRODUCTION: In the current COVID-19 pandemic, clinicians require a manageable set of decisive parameters that can be used to (i) rapidly identify SARS-CoV-2 positive patients, (ii) identify patients with a high risk of a fatal outcome on hospital admission, and (iii) recognize longitudinal warning...

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Autores principales: Styrzynski, Filip, Zhakparov, Damir, Schmid, Marco, Roqueiro, Damian, Lukasik, Zuzanna, Solek, Julia, Nowicki, Jakub, Dobrogowski, Milosz, Makowska, Joanna, Sokolowska, Milena, Baerenfaller, Katja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Healthcare 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9638383/
https://www.ncbi.nlm.nih.gov/pubmed/36333475
http://dx.doi.org/10.1007/s40121-022-00707-8
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author Styrzynski, Filip
Zhakparov, Damir
Schmid, Marco
Roqueiro, Damian
Lukasik, Zuzanna
Solek, Julia
Nowicki, Jakub
Dobrogowski, Milosz
Makowska, Joanna
Sokolowska, Milena
Baerenfaller, Katja
author_facet Styrzynski, Filip
Zhakparov, Damir
Schmid, Marco
Roqueiro, Damian
Lukasik, Zuzanna
Solek, Julia
Nowicki, Jakub
Dobrogowski, Milosz
Makowska, Joanna
Sokolowska, Milena
Baerenfaller, Katja
author_sort Styrzynski, Filip
collection PubMed
description INTRODUCTION: In the current COVID-19 pandemic, clinicians require a manageable set of decisive parameters that can be used to (i) rapidly identify SARS-CoV-2 positive patients, (ii) identify patients with a high risk of a fatal outcome on hospital admission, and (iii) recognize longitudinal warning signs of a possible fatal outcome. METHODS: This comparative study was performed in 515 patients in the Maria Skłodowska-Curie Specialty Voivodeship Hospital in Zgierz, Poland. The study groups comprised 314 patients with COVID-like symptoms who tested negative and 201 patients who tested positive for SARS-CoV-2 infection; of the latter, 72 patients with COVID-19 died and 129 were released from hospital. Data on which we trained several machine learning (ML) models included clinical findings on admission and during hospitalization, symptoms, epidemiological risk, and reported comorbidities and medications. RESULTS: We identified a set of eight on-admission parameters: white blood cells, antibody-synthesizing lymphocytes, ratios of basophils/lymphocytes, platelets/neutrophils, and monocytes/lymphocytes, procalcitonin, creatinine, and C-reactive protein. The medical decision tree built using these parameters differentiated between SARS-CoV-2 positive and negative patients with up to 90–100% accuracy. Patients with COVID-19 who on hospital admission were older, had higher procalcitonin, C-reactive protein, and troponin I levels together with lower hemoglobin and platelets/neutrophils ratio were found to be at highest risk of death from COVID-19. Furthermore, we identified longitudinal patterns in C-reactive protein, white blood cells, and D dimer that predicted the disease outcome. CONCLUSIONS: Our study provides sets of easily obtainable parameters that allow one to assess the status of a patient with SARS-CoV-2 infection, and the risk of a fatal disease outcome on hospital admission and during the course of the disease. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s40121-022-00707-8.
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spelling pubmed-96383832022-11-07 Machine Learning Successfully Detects Patients with COVID-19 Prior to PCR Results and Predicts Their Survival Based on Standard Laboratory Parameters in an Observational Study Styrzynski, Filip Zhakparov, Damir Schmid, Marco Roqueiro, Damian Lukasik, Zuzanna Solek, Julia Nowicki, Jakub Dobrogowski, Milosz Makowska, Joanna Sokolowska, Milena Baerenfaller, Katja Infect Dis Ther Original Research INTRODUCTION: In the current COVID-19 pandemic, clinicians require a manageable set of decisive parameters that can be used to (i) rapidly identify SARS-CoV-2 positive patients, (ii) identify patients with a high risk of a fatal outcome on hospital admission, and (iii) recognize longitudinal warning signs of a possible fatal outcome. METHODS: This comparative study was performed in 515 patients in the Maria Skłodowska-Curie Specialty Voivodeship Hospital in Zgierz, Poland. The study groups comprised 314 patients with COVID-like symptoms who tested negative and 201 patients who tested positive for SARS-CoV-2 infection; of the latter, 72 patients with COVID-19 died and 129 were released from hospital. Data on which we trained several machine learning (ML) models included clinical findings on admission and during hospitalization, symptoms, epidemiological risk, and reported comorbidities and medications. RESULTS: We identified a set of eight on-admission parameters: white blood cells, antibody-synthesizing lymphocytes, ratios of basophils/lymphocytes, platelets/neutrophils, and monocytes/lymphocytes, procalcitonin, creatinine, and C-reactive protein. The medical decision tree built using these parameters differentiated between SARS-CoV-2 positive and negative patients with up to 90–100% accuracy. Patients with COVID-19 who on hospital admission were older, had higher procalcitonin, C-reactive protein, and troponin I levels together with lower hemoglobin and platelets/neutrophils ratio were found to be at highest risk of death from COVID-19. Furthermore, we identified longitudinal patterns in C-reactive protein, white blood cells, and D dimer that predicted the disease outcome. CONCLUSIONS: Our study provides sets of easily obtainable parameters that allow one to assess the status of a patient with SARS-CoV-2 infection, and the risk of a fatal disease outcome on hospital admission and during the course of the disease. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s40121-022-00707-8. Springer Healthcare 2022-11-04 2023-01 /pmc/articles/PMC9638383/ /pubmed/36333475 http://dx.doi.org/10.1007/s40121-022-00707-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by-nc/4.0/Open AccessThis article is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License, which permits any non-commercial use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) .
spellingShingle Original Research
Styrzynski, Filip
Zhakparov, Damir
Schmid, Marco
Roqueiro, Damian
Lukasik, Zuzanna
Solek, Julia
Nowicki, Jakub
Dobrogowski, Milosz
Makowska, Joanna
Sokolowska, Milena
Baerenfaller, Katja
Machine Learning Successfully Detects Patients with COVID-19 Prior to PCR Results and Predicts Their Survival Based on Standard Laboratory Parameters in an Observational Study
title Machine Learning Successfully Detects Patients with COVID-19 Prior to PCR Results and Predicts Their Survival Based on Standard Laboratory Parameters in an Observational Study
title_full Machine Learning Successfully Detects Patients with COVID-19 Prior to PCR Results and Predicts Their Survival Based on Standard Laboratory Parameters in an Observational Study
title_fullStr Machine Learning Successfully Detects Patients with COVID-19 Prior to PCR Results and Predicts Their Survival Based on Standard Laboratory Parameters in an Observational Study
title_full_unstemmed Machine Learning Successfully Detects Patients with COVID-19 Prior to PCR Results and Predicts Their Survival Based on Standard Laboratory Parameters in an Observational Study
title_short Machine Learning Successfully Detects Patients with COVID-19 Prior to PCR Results and Predicts Their Survival Based on Standard Laboratory Parameters in an Observational Study
title_sort machine learning successfully detects patients with covid-19 prior to pcr results and predicts their survival based on standard laboratory parameters in an observational study
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9638383/
https://www.ncbi.nlm.nih.gov/pubmed/36333475
http://dx.doi.org/10.1007/s40121-022-00707-8
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