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Development of a novel immune-related lncRNA prognostic signature for patients with hepatocellular carcinoma

Hepatocellular carcinoma (HCC) is the most common neoplasm and the major cause of cancer-associated death worldwide. The high mortality rate of HCC is mainly attributed to its widespread prevalence and the lack of effective treatment. Immunotherapy as a promising, innovative approach has revolutioni...

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Autores principales: Li, Rui, Jin, Chen, Zhao, Weiheng, Liang, Rui, Xiong, Huihua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639314/
https://www.ncbi.nlm.nih.gov/pubmed/36344926
http://dx.doi.org/10.1186/s12876-022-02540-2
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author Li, Rui
Jin, Chen
Zhao, Weiheng
Liang, Rui
Xiong, Huihua
author_facet Li, Rui
Jin, Chen
Zhao, Weiheng
Liang, Rui
Xiong, Huihua
author_sort Li, Rui
collection PubMed
description Hepatocellular carcinoma (HCC) is the most common neoplasm and the major cause of cancer-associated death worldwide. The high mortality rate of HCC is mainly attributed to its widespread prevalence and the lack of effective treatment. Immunotherapy as a promising, innovative approach has revolutionised the treatment of solid tumours. However, owing to the heterogeneity and complex tumour microenvironment of HCC, an efficient biomarker for immunotherapy has yet to be identified. We investigated the role of immune-related long non-coding RNAs (lncRNAs) as prognostic biomarkers in patients with HCC from The Cancer Genome Atlas (TCGA) database. Spearman correlation, univariate and multivariate Cox, and lasso regression analyses were utilised to screen lncRNAs associated with prognosis. Four lncRNAs were filtered out to develop an immune-associated lncRNA prognostic signature in TCGA training as well as validation cohorts. Patients with HCC were then categorised into low- and high-risk groups according to the median value of the risk scores to evaluate the ability of the prognostic model between training and validation cohorts. A nomogram (based on risk score and stage) was constructed to appraise the general overall survival (OS) of patients with HCC. Differences in immune cell infiltration, immune checkpoint inhibitor (ICI) treatment response, gene mutation, and drug sensitivity were observed between the two groups. Thus, the lncRNA prognostic signature can serve as a sensitive prognostic biomarker with potential in individualised immunotherapy for HCC patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12876-022-02540-2.
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spelling pubmed-96393142022-11-08 Development of a novel immune-related lncRNA prognostic signature for patients with hepatocellular carcinoma Li, Rui Jin, Chen Zhao, Weiheng Liang, Rui Xiong, Huihua BMC Gastroenterol Research Hepatocellular carcinoma (HCC) is the most common neoplasm and the major cause of cancer-associated death worldwide. The high mortality rate of HCC is mainly attributed to its widespread prevalence and the lack of effective treatment. Immunotherapy as a promising, innovative approach has revolutionised the treatment of solid tumours. However, owing to the heterogeneity and complex tumour microenvironment of HCC, an efficient biomarker for immunotherapy has yet to be identified. We investigated the role of immune-related long non-coding RNAs (lncRNAs) as prognostic biomarkers in patients with HCC from The Cancer Genome Atlas (TCGA) database. Spearman correlation, univariate and multivariate Cox, and lasso regression analyses were utilised to screen lncRNAs associated with prognosis. Four lncRNAs were filtered out to develop an immune-associated lncRNA prognostic signature in TCGA training as well as validation cohorts. Patients with HCC were then categorised into low- and high-risk groups according to the median value of the risk scores to evaluate the ability of the prognostic model between training and validation cohorts. A nomogram (based on risk score and stage) was constructed to appraise the general overall survival (OS) of patients with HCC. Differences in immune cell infiltration, immune checkpoint inhibitor (ICI) treatment response, gene mutation, and drug sensitivity were observed between the two groups. Thus, the lncRNA prognostic signature can serve as a sensitive prognostic biomarker with potential in individualised immunotherapy for HCC patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12876-022-02540-2. BioMed Central 2022-11-07 /pmc/articles/PMC9639314/ /pubmed/36344926 http://dx.doi.org/10.1186/s12876-022-02540-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Li, Rui
Jin, Chen
Zhao, Weiheng
Liang, Rui
Xiong, Huihua
Development of a novel immune-related lncRNA prognostic signature for patients with hepatocellular carcinoma
title Development of a novel immune-related lncRNA prognostic signature for patients with hepatocellular carcinoma
title_full Development of a novel immune-related lncRNA prognostic signature for patients with hepatocellular carcinoma
title_fullStr Development of a novel immune-related lncRNA prognostic signature for patients with hepatocellular carcinoma
title_full_unstemmed Development of a novel immune-related lncRNA prognostic signature for patients with hepatocellular carcinoma
title_short Development of a novel immune-related lncRNA prognostic signature for patients with hepatocellular carcinoma
title_sort development of a novel immune-related lncrna prognostic signature for patients with hepatocellular carcinoma
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639314/
https://www.ncbi.nlm.nih.gov/pubmed/36344926
http://dx.doi.org/10.1186/s12876-022-02540-2
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