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Fruit-CoV: An efficient vision-based framework for speedy detection and diagnosis of SARS-CoV-2 infections through recorded cough sounds()

COVID-19 is an infectious disease caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). This deadly virus has spread worldwide, leading to a global pandemic since March 2020. A recent variant of SARS-CoV-2 named Delta is intractably contagious and responsible for more than four...

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Autores principales: Nguyen, Long H., Pham, Nhat Truong, Do, Van Huong, Nguyen, Liu Tai, Nguyen, Thanh Tin, Nguyen, Hai, Nguyen, Ngoc Duy, Nguyen, Thanh Thi, Nguyen, Sy Dzung, Bhatti, Asim, Lim, Chee Peng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639421/
https://www.ncbi.nlm.nih.gov/pubmed/36407848
http://dx.doi.org/10.1016/j.eswa.2022.119212
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author Nguyen, Long H.
Pham, Nhat Truong
Do, Van Huong
Nguyen, Liu Tai
Nguyen, Thanh Tin
Nguyen, Hai
Nguyen, Ngoc Duy
Nguyen, Thanh Thi
Nguyen, Sy Dzung
Bhatti, Asim
Lim, Chee Peng
author_facet Nguyen, Long H.
Pham, Nhat Truong
Do, Van Huong
Nguyen, Liu Tai
Nguyen, Thanh Tin
Nguyen, Hai
Nguyen, Ngoc Duy
Nguyen, Thanh Thi
Nguyen, Sy Dzung
Bhatti, Asim
Lim, Chee Peng
author_sort Nguyen, Long H.
collection PubMed
description COVID-19 is an infectious disease caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). This deadly virus has spread worldwide, leading to a global pandemic since March 2020. A recent variant of SARS-CoV-2 named Delta is intractably contagious and responsible for more than four million deaths globally. Therefore, developing an efficient self-testing service for SARS-CoV-2 at home is vital. In this study, a two-stage vision-based framework, namely Fruit-CoV, is introduced for detecting SARS-CoV-2 infections through recorded cough sounds. Specifically, audio signals are converted into Log-Mel spectrograms, and the EfficientNet-V2 network is used to extract their visual features in the first stage. In the second stage, 14 convolutional layers extracted from the large-scale Pretrained Audio Neural Networks for audio pattern recognition (PANNs) and the Wavegram-Log-Mel-CNN are employed to aggregate feature representations of the Log-Mel spectrograms and the waveform. Finally, the combined features are used to train a binary classifier. In this study, a dataset provided by the AICovidVN 115M Challenge is employed for evaluation. It includes 7,371 recorded cough sounds collected throughout Vietnam, India, and Switzerland. Experimental results indicate that the proposed model achieves an Area Under the Receiver Operating Characteristic Curve (AUC) score of 92.8% and ranks first on the final leaderboard of the AICovidVN 115M Challenge. Our code is publicly available.
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spelling pubmed-96394212022-11-14 Fruit-CoV: An efficient vision-based framework for speedy detection and diagnosis of SARS-CoV-2 infections through recorded cough sounds() Nguyen, Long H. Pham, Nhat Truong Do, Van Huong Nguyen, Liu Tai Nguyen, Thanh Tin Nguyen, Hai Nguyen, Ngoc Duy Nguyen, Thanh Thi Nguyen, Sy Dzung Bhatti, Asim Lim, Chee Peng Expert Syst Appl Article COVID-19 is an infectious disease caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). This deadly virus has spread worldwide, leading to a global pandemic since March 2020. A recent variant of SARS-CoV-2 named Delta is intractably contagious and responsible for more than four million deaths globally. Therefore, developing an efficient self-testing service for SARS-CoV-2 at home is vital. In this study, a two-stage vision-based framework, namely Fruit-CoV, is introduced for detecting SARS-CoV-2 infections through recorded cough sounds. Specifically, audio signals are converted into Log-Mel spectrograms, and the EfficientNet-V2 network is used to extract their visual features in the first stage. In the second stage, 14 convolutional layers extracted from the large-scale Pretrained Audio Neural Networks for audio pattern recognition (PANNs) and the Wavegram-Log-Mel-CNN are employed to aggregate feature representations of the Log-Mel spectrograms and the waveform. Finally, the combined features are used to train a binary classifier. In this study, a dataset provided by the AICovidVN 115M Challenge is employed for evaluation. It includes 7,371 recorded cough sounds collected throughout Vietnam, India, and Switzerland. Experimental results indicate that the proposed model achieves an Area Under the Receiver Operating Characteristic Curve (AUC) score of 92.8% and ranks first on the final leaderboard of the AICovidVN 115M Challenge. Our code is publicly available. Elsevier Ltd. 2023-03-01 2022-11-07 /pmc/articles/PMC9639421/ /pubmed/36407848 http://dx.doi.org/10.1016/j.eswa.2022.119212 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Nguyen, Long H.
Pham, Nhat Truong
Do, Van Huong
Nguyen, Liu Tai
Nguyen, Thanh Tin
Nguyen, Hai
Nguyen, Ngoc Duy
Nguyen, Thanh Thi
Nguyen, Sy Dzung
Bhatti, Asim
Lim, Chee Peng
Fruit-CoV: An efficient vision-based framework for speedy detection and diagnosis of SARS-CoV-2 infections through recorded cough sounds()
title Fruit-CoV: An efficient vision-based framework for speedy detection and diagnosis of SARS-CoV-2 infections through recorded cough sounds()
title_full Fruit-CoV: An efficient vision-based framework for speedy detection and diagnosis of SARS-CoV-2 infections through recorded cough sounds()
title_fullStr Fruit-CoV: An efficient vision-based framework for speedy detection and diagnosis of SARS-CoV-2 infections through recorded cough sounds()
title_full_unstemmed Fruit-CoV: An efficient vision-based framework for speedy detection and diagnosis of SARS-CoV-2 infections through recorded cough sounds()
title_short Fruit-CoV: An efficient vision-based framework for speedy detection and diagnosis of SARS-CoV-2 infections through recorded cough sounds()
title_sort fruit-cov: an efficient vision-based framework for speedy detection and diagnosis of sars-cov-2 infections through recorded cough sounds()
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639421/
https://www.ncbi.nlm.nih.gov/pubmed/36407848
http://dx.doi.org/10.1016/j.eswa.2022.119212
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