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Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae

Veronica arvensis, which is an annual flowering plant in the plantain family Plantaginaceae, has commonly used as a Chinese herbal medicine to treat malaria in China. Here, the complete plastome of V. arvensis was successfully assembled based on genome skimming sequencing. The plastome of V. arvensi...

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Autores principales: Liu, Huabing, He, Wenmiao, Zhang, Xiaobing, Jiang, Zhimin, Li, Qi, Xia, Chen, Wang, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639546/
https://www.ncbi.nlm.nih.gov/pubmed/36353054
http://dx.doi.org/10.1080/23802359.2022.2139162
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author Liu, Huabing
He, Wenmiao
Zhang, Xiaobing
Jiang, Zhimin
Li, Qi
Xia, Chen
Wang, Hui
author_facet Liu, Huabing
He, Wenmiao
Zhang, Xiaobing
Jiang, Zhimin
Li, Qi
Xia, Chen
Wang, Hui
author_sort Liu, Huabing
collection PubMed
description Veronica arvensis, which is an annual flowering plant in the plantain family Plantaginaceae, has commonly used as a Chinese herbal medicine to treat malaria in China. Here, the complete plastome of V. arvensis was successfully assembled based on genome skimming sequencing. The plastome of V. arvensis was 149,386 bp in length, comprising a pair of inverted repeats (IR; 24,946 bp) separated by a large single-copy (LSC) region (82,004 bp) and a small single-copy (SSC) region (17,490 bp). The plastid genome encoded 113 unique genes, consisting of 79 protein-coding genes, 30 tRNA genes, and four rRNA genes, with 19 duplicated genes in the IR regions. Six plastid hotspot regions (trnH-psbA, trnK-rps16, atpI-rps2, ndhF-rpl32, ccsA-ndhD and rps15-ycf1) were identified within Veronica. Phylogenetic analysis showed that the representative species from Veronica was monophyletic. V. persica and V. polita formed a maximum clade, followed by sister to V. arvensis.
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spelling pubmed-96395462022-11-08 Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae Liu, Huabing He, Wenmiao Zhang, Xiaobing Jiang, Zhimin Li, Qi Xia, Chen Wang, Hui Mitochondrial DNA B Resour Plastome Announcement Veronica arvensis, which is an annual flowering plant in the plantain family Plantaginaceae, has commonly used as a Chinese herbal medicine to treat malaria in China. Here, the complete plastome of V. arvensis was successfully assembled based on genome skimming sequencing. The plastome of V. arvensis was 149,386 bp in length, comprising a pair of inverted repeats (IR; 24,946 bp) separated by a large single-copy (LSC) region (82,004 bp) and a small single-copy (SSC) region (17,490 bp). The plastid genome encoded 113 unique genes, consisting of 79 protein-coding genes, 30 tRNA genes, and four rRNA genes, with 19 duplicated genes in the IR regions. Six plastid hotspot regions (trnH-psbA, trnK-rps16, atpI-rps2, ndhF-rpl32, ccsA-ndhD and rps15-ycf1) were identified within Veronica. Phylogenetic analysis showed that the representative species from Veronica was monophyletic. V. persica and V. polita formed a maximum clade, followed by sister to V. arvensis. Taylor & Francis 2022-11-04 /pmc/articles/PMC9639546/ /pubmed/36353054 http://dx.doi.org/10.1080/23802359.2022.2139162 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Liu, Huabing
He, Wenmiao
Zhang, Xiaobing
Jiang, Zhimin
Li, Qi
Xia, Chen
Wang, Hui
Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae
title Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae
title_full Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae
title_fullStr Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae
title_full_unstemmed Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae
title_short Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae
title_sort characterization of the complete chloroplast genome of veronica arvensis and its phylogenomic inference in plantaginaceae
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639546/
https://www.ncbi.nlm.nih.gov/pubmed/36353054
http://dx.doi.org/10.1080/23802359.2022.2139162
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