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Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae
Veronica arvensis, which is an annual flowering plant in the plantain family Plantaginaceae, has commonly used as a Chinese herbal medicine to treat malaria in China. Here, the complete plastome of V. arvensis was successfully assembled based on genome skimming sequencing. The plastome of V. arvensi...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639546/ https://www.ncbi.nlm.nih.gov/pubmed/36353054 http://dx.doi.org/10.1080/23802359.2022.2139162 |
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author | Liu, Huabing He, Wenmiao Zhang, Xiaobing Jiang, Zhimin Li, Qi Xia, Chen Wang, Hui |
author_facet | Liu, Huabing He, Wenmiao Zhang, Xiaobing Jiang, Zhimin Li, Qi Xia, Chen Wang, Hui |
author_sort | Liu, Huabing |
collection | PubMed |
description | Veronica arvensis, which is an annual flowering plant in the plantain family Plantaginaceae, has commonly used as a Chinese herbal medicine to treat malaria in China. Here, the complete plastome of V. arvensis was successfully assembled based on genome skimming sequencing. The plastome of V. arvensis was 149,386 bp in length, comprising a pair of inverted repeats (IR; 24,946 bp) separated by a large single-copy (LSC) region (82,004 bp) and a small single-copy (SSC) region (17,490 bp). The plastid genome encoded 113 unique genes, consisting of 79 protein-coding genes, 30 tRNA genes, and four rRNA genes, with 19 duplicated genes in the IR regions. Six plastid hotspot regions (trnH-psbA, trnK-rps16, atpI-rps2, ndhF-rpl32, ccsA-ndhD and rps15-ycf1) were identified within Veronica. Phylogenetic analysis showed that the representative species from Veronica was monophyletic. V. persica and V. polita formed a maximum clade, followed by sister to V. arvensis. |
format | Online Article Text |
id | pubmed-9639546 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-96395462022-11-08 Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae Liu, Huabing He, Wenmiao Zhang, Xiaobing Jiang, Zhimin Li, Qi Xia, Chen Wang, Hui Mitochondrial DNA B Resour Plastome Announcement Veronica arvensis, which is an annual flowering plant in the plantain family Plantaginaceae, has commonly used as a Chinese herbal medicine to treat malaria in China. Here, the complete plastome of V. arvensis was successfully assembled based on genome skimming sequencing. The plastome of V. arvensis was 149,386 bp in length, comprising a pair of inverted repeats (IR; 24,946 bp) separated by a large single-copy (LSC) region (82,004 bp) and a small single-copy (SSC) region (17,490 bp). The plastid genome encoded 113 unique genes, consisting of 79 protein-coding genes, 30 tRNA genes, and four rRNA genes, with 19 duplicated genes in the IR regions. Six plastid hotspot regions (trnH-psbA, trnK-rps16, atpI-rps2, ndhF-rpl32, ccsA-ndhD and rps15-ycf1) were identified within Veronica. Phylogenetic analysis showed that the representative species from Veronica was monophyletic. V. persica and V. polita formed a maximum clade, followed by sister to V. arvensis. Taylor & Francis 2022-11-04 /pmc/articles/PMC9639546/ /pubmed/36353054 http://dx.doi.org/10.1080/23802359.2022.2139162 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Liu, Huabing He, Wenmiao Zhang, Xiaobing Jiang, Zhimin Li, Qi Xia, Chen Wang, Hui Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae |
title | Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae |
title_full | Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae |
title_fullStr | Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae |
title_full_unstemmed | Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae |
title_short | Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae |
title_sort | characterization of the complete chloroplast genome of veronica arvensis and its phylogenomic inference in plantaginaceae |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639546/ https://www.ncbi.nlm.nih.gov/pubmed/36353054 http://dx.doi.org/10.1080/23802359.2022.2139162 |
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