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Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity
DNA extraction, a vital pre-requisite for most biological studies, continues to be studied extensively. According to some studies, DNA shows a certain degree of absorbability on filter paper made of plant fiber-based adsorbent material. However, the principle underlying such specific adsorption as w...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639815/ https://www.ncbi.nlm.nih.gov/pubmed/36342943 http://dx.doi.org/10.1371/journal.pone.0277138 |
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author | Ye, Xiaojun Lei, Bo |
author_facet | Ye, Xiaojun Lei, Bo |
author_sort | Ye, Xiaojun |
collection | PubMed |
description | DNA extraction, a vital pre-requisite for most biological studies, continues to be studied extensively. According to some studies, DNA shows a certain degree of absorbability on filter paper made of plant fiber-based adsorbent material. However, the principle underlying such specific adsorption as well as plant species associated with plant fiber-based adsorbents and optimized extraction conditions have not yet been studied. This study demonstrates the tight correlation between crystallinity and hygroscopicity in plant fiber-based adsorbents used for DNA extraction and proposes the concept of DNA adsorption on plant fiber-based adsorbents, for the first time. We also explored optimal extracting and eluting conditions and developed a novel plant fiber-based DNA extraction method that was quadruple times more powerful than current approaches. Starting with the screening of various types of earthed plant fiber-based adsorbents, we went on to mine new plant fiber-based adsorbents, bamboo paper and degreased cotton, and succeeded in increasing their efficiency of DNA extraction to 4.2 times than that of current approaches. We found a very strong correlation between the crystallinity and hygroscopicity of plant fiber-based adsorbents which showed efficiency for DNA extraction, and thus propose a principle that potentially governs such specific adsorption processes, in the hope that this information may guide related multidisciplinary research studies in the future. Nanodrop, electrophoresis and PCR were selected to demonstrate the quantity, quality, integrity and utility of the extracted DNA. Furthermore, crystallinity, hygroscopicity, pore size distribution and composition of plant fiber-based adsorbents were studied to explore their correlation in an attempt to understand the principle underlying this particular type of adsorption. The findings of this study may be further extended to the extraction of other types of nucleic acids with similar biochemical properties. |
format | Online Article Text |
id | pubmed-9639815 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-96398152022-11-08 Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity Ye, Xiaojun Lei, Bo PLoS One Research Article DNA extraction, a vital pre-requisite for most biological studies, continues to be studied extensively. According to some studies, DNA shows a certain degree of absorbability on filter paper made of plant fiber-based adsorbent material. However, the principle underlying such specific adsorption as well as plant species associated with plant fiber-based adsorbents and optimized extraction conditions have not yet been studied. This study demonstrates the tight correlation between crystallinity and hygroscopicity in plant fiber-based adsorbents used for DNA extraction and proposes the concept of DNA adsorption on plant fiber-based adsorbents, for the first time. We also explored optimal extracting and eluting conditions and developed a novel plant fiber-based DNA extraction method that was quadruple times more powerful than current approaches. Starting with the screening of various types of earthed plant fiber-based adsorbents, we went on to mine new plant fiber-based adsorbents, bamboo paper and degreased cotton, and succeeded in increasing their efficiency of DNA extraction to 4.2 times than that of current approaches. We found a very strong correlation between the crystallinity and hygroscopicity of plant fiber-based adsorbents which showed efficiency for DNA extraction, and thus propose a principle that potentially governs such specific adsorption processes, in the hope that this information may guide related multidisciplinary research studies in the future. Nanodrop, electrophoresis and PCR were selected to demonstrate the quantity, quality, integrity and utility of the extracted DNA. Furthermore, crystallinity, hygroscopicity, pore size distribution and composition of plant fiber-based adsorbents were studied to explore their correlation in an attempt to understand the principle underlying this particular type of adsorption. The findings of this study may be further extended to the extraction of other types of nucleic acids with similar biochemical properties. Public Library of Science 2022-11-07 /pmc/articles/PMC9639815/ /pubmed/36342943 http://dx.doi.org/10.1371/journal.pone.0277138 Text en © 2022 Ye, Lei https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Ye, Xiaojun Lei, Bo Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity |
title | Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity |
title_full | Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity |
title_fullStr | Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity |
title_full_unstemmed | Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity |
title_short | Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity |
title_sort | improved dna extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639815/ https://www.ncbi.nlm.nih.gov/pubmed/36342943 http://dx.doi.org/10.1371/journal.pone.0277138 |
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