Cargando…

Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity

DNA extraction, a vital pre-requisite for most biological studies, continues to be studied extensively. According to some studies, DNA shows a certain degree of absorbability on filter paper made of plant fiber-based adsorbent material. However, the principle underlying such specific adsorption as w...

Descripción completa

Detalles Bibliográficos
Autores principales: Ye, Xiaojun, Lei, Bo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639815/
https://www.ncbi.nlm.nih.gov/pubmed/36342943
http://dx.doi.org/10.1371/journal.pone.0277138
_version_ 1784825717503033344
author Ye, Xiaojun
Lei, Bo
author_facet Ye, Xiaojun
Lei, Bo
author_sort Ye, Xiaojun
collection PubMed
description DNA extraction, a vital pre-requisite for most biological studies, continues to be studied extensively. According to some studies, DNA shows a certain degree of absorbability on filter paper made of plant fiber-based adsorbent material. However, the principle underlying such specific adsorption as well as plant species associated with plant fiber-based adsorbents and optimized extraction conditions have not yet been studied. This study demonstrates the tight correlation between crystallinity and hygroscopicity in plant fiber-based adsorbents used for DNA extraction and proposes the concept of DNA adsorption on plant fiber-based adsorbents, for the first time. We also explored optimal extracting and eluting conditions and developed a novel plant fiber-based DNA extraction method that was quadruple times more powerful than current approaches. Starting with the screening of various types of earthed plant fiber-based adsorbents, we went on to mine new plant fiber-based adsorbents, bamboo paper and degreased cotton, and succeeded in increasing their efficiency of DNA extraction to 4.2 times than that of current approaches. We found a very strong correlation between the crystallinity and hygroscopicity of plant fiber-based adsorbents which showed efficiency for DNA extraction, and thus propose a principle that potentially governs such specific adsorption processes, in the hope that this information may guide related multidisciplinary research studies in the future. Nanodrop, electrophoresis and PCR were selected to demonstrate the quantity, quality, integrity and utility of the extracted DNA. Furthermore, crystallinity, hygroscopicity, pore size distribution and composition of plant fiber-based adsorbents were studied to explore their correlation in an attempt to understand the principle underlying this particular type of adsorption. The findings of this study may be further extended to the extraction of other types of nucleic acids with similar biochemical properties.
format Online
Article
Text
id pubmed-9639815
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-96398152022-11-08 Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity Ye, Xiaojun Lei, Bo PLoS One Research Article DNA extraction, a vital pre-requisite for most biological studies, continues to be studied extensively. According to some studies, DNA shows a certain degree of absorbability on filter paper made of plant fiber-based adsorbent material. However, the principle underlying such specific adsorption as well as plant species associated with plant fiber-based adsorbents and optimized extraction conditions have not yet been studied. This study demonstrates the tight correlation between crystallinity and hygroscopicity in plant fiber-based adsorbents used for DNA extraction and proposes the concept of DNA adsorption on plant fiber-based adsorbents, for the first time. We also explored optimal extracting and eluting conditions and developed a novel plant fiber-based DNA extraction method that was quadruple times more powerful than current approaches. Starting with the screening of various types of earthed plant fiber-based adsorbents, we went on to mine new plant fiber-based adsorbents, bamboo paper and degreased cotton, and succeeded in increasing their efficiency of DNA extraction to 4.2 times than that of current approaches. We found a very strong correlation between the crystallinity and hygroscopicity of plant fiber-based adsorbents which showed efficiency for DNA extraction, and thus propose a principle that potentially governs such specific adsorption processes, in the hope that this information may guide related multidisciplinary research studies in the future. Nanodrop, electrophoresis and PCR were selected to demonstrate the quantity, quality, integrity and utility of the extracted DNA. Furthermore, crystallinity, hygroscopicity, pore size distribution and composition of plant fiber-based adsorbents were studied to explore their correlation in an attempt to understand the principle underlying this particular type of adsorption. The findings of this study may be further extended to the extraction of other types of nucleic acids with similar biochemical properties. Public Library of Science 2022-11-07 /pmc/articles/PMC9639815/ /pubmed/36342943 http://dx.doi.org/10.1371/journal.pone.0277138 Text en © 2022 Ye, Lei https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ye, Xiaojun
Lei, Bo
Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity
title Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity
title_full Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity
title_fullStr Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity
title_full_unstemmed Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity
title_short Improved DNA extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity
title_sort improved dna extraction on bamboo paper and cotton is tightly correlated with their crystallinity and hygroscopicity
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9639815/
https://www.ncbi.nlm.nih.gov/pubmed/36342943
http://dx.doi.org/10.1371/journal.pone.0277138
work_keys_str_mv AT yexiaojun improveddnaextractiononbamboopaperandcottonistightlycorrelatedwiththeircrystallinityandhygroscopicity
AT leibo improveddnaextractiononbamboopaperandcottonistightlycorrelatedwiththeircrystallinityandhygroscopicity