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Robust replication initiation from coupled homeostatic mechanisms

The bacterium Escherichia coli initiates replication once per cell cycle at a precise volume per origin and adds an on average constant volume between successive initiation events, independent of the initiation size. Yet, a molecular model that can explain these observations has been lacking. Experi...

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Autores principales: Berger, Mareike, Wolde, Pieter Rein ten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9640692/
https://www.ncbi.nlm.nih.gov/pubmed/36344507
http://dx.doi.org/10.1038/s41467-022-33886-6
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author Berger, Mareike
Wolde, Pieter Rein ten
author_facet Berger, Mareike
Wolde, Pieter Rein ten
author_sort Berger, Mareike
collection PubMed
description The bacterium Escherichia coli initiates replication once per cell cycle at a precise volume per origin and adds an on average constant volume between successive initiation events, independent of the initiation size. Yet, a molecular model that can explain these observations has been lacking. Experiments indicate that E. coli controls replication initiation via titration and activation of the initiator protein DnaA. Here, we study by mathematical modelling how these two mechanisms interact to generate robust replication-initiation cycles. We first show that a mechanism solely based on titration generates stable replication cycles at low growth rates, but inevitably causes premature reinitiation events at higher growth rates. In this regime, the DnaA activation switch becomes essential for stable replication initiation. Conversely, while the activation switch alone yields robust rhythms at high growth rates, titration can strongly enhance the stability of the switch at low growth rates. Our analysis thus predicts that both mechanisms together drive robust replication cycles at all growth rates. In addition, it reveals how an origin-density sensor yields adder correlations.
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spelling pubmed-96406922022-11-15 Robust replication initiation from coupled homeostatic mechanisms Berger, Mareike Wolde, Pieter Rein ten Nat Commun Article The bacterium Escherichia coli initiates replication once per cell cycle at a precise volume per origin and adds an on average constant volume between successive initiation events, independent of the initiation size. Yet, a molecular model that can explain these observations has been lacking. Experiments indicate that E. coli controls replication initiation via titration and activation of the initiator protein DnaA. Here, we study by mathematical modelling how these two mechanisms interact to generate robust replication-initiation cycles. We first show that a mechanism solely based on titration generates stable replication cycles at low growth rates, but inevitably causes premature reinitiation events at higher growth rates. In this regime, the DnaA activation switch becomes essential for stable replication initiation. Conversely, while the activation switch alone yields robust rhythms at high growth rates, titration can strongly enhance the stability of the switch at low growth rates. Our analysis thus predicts that both mechanisms together drive robust replication cycles at all growth rates. In addition, it reveals how an origin-density sensor yields adder correlations. Nature Publishing Group UK 2022-11-07 /pmc/articles/PMC9640692/ /pubmed/36344507 http://dx.doi.org/10.1038/s41467-022-33886-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Berger, Mareike
Wolde, Pieter Rein ten
Robust replication initiation from coupled homeostatic mechanisms
title Robust replication initiation from coupled homeostatic mechanisms
title_full Robust replication initiation from coupled homeostatic mechanisms
title_fullStr Robust replication initiation from coupled homeostatic mechanisms
title_full_unstemmed Robust replication initiation from coupled homeostatic mechanisms
title_short Robust replication initiation from coupled homeostatic mechanisms
title_sort robust replication initiation from coupled homeostatic mechanisms
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9640692/
https://www.ncbi.nlm.nih.gov/pubmed/36344507
http://dx.doi.org/10.1038/s41467-022-33886-6
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