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Identification of Biclusters in Huntington’s Disease Dataset Using a New Variant of Grey Wolf Optimizer

Biclustering is a useful technique to identify subgroups of genes that have same type of expression characteristics with respect to some conditions in microarray gene expression data. This is a complex problem where meta-heuristic algorithms are more suitable to explore the large datasets for findin...

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Autores principales: Adhikary, Joy, Acharyya, Sriyankar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer India 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9640792/
http://dx.doi.org/10.1007/s40031-022-00815-6
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author Adhikary, Joy
Acharyya, Sriyankar
author_facet Adhikary, Joy
Acharyya, Sriyankar
author_sort Adhikary, Joy
collection PubMed
description Biclustering is a useful technique to identify subgroups of genes that have same type of expression characteristics with respect to some conditions in microarray gene expression data. This is a complex problem where meta-heuristic algorithms are more suitable to explore the large datasets for finding biclusters of optimal quality. In this paper, there is an attempt for the first time to choose biclusters with respect to shifting and scaling behaviors using Huntington's disease database applying Grey Wolf Optimizer (GWO) along with its proposed modified version namely, Enhanced Search Grey Wolf Optimizer (ES-GWO). ES-GWO incorporates strategies that make the search process more balanced with respect to exploration and exploitation compared to the state-of-the-art techniques (GWO, RM-GWO). The efficacy of ES-GWO is validated on several benchmark instances and compared with the existing meta-heuristic techniques (PSO, HS, Firefly, ABC and DE) based on convergence quality. Finally, from 100 biclusters produced by ES-GWO top 5 were separated. 7 genes common in those 5 biclusters have proved to be biologically significant.
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spelling pubmed-96407922022-11-14 Identification of Biclusters in Huntington’s Disease Dataset Using a New Variant of Grey Wolf Optimizer Adhikary, Joy Acharyya, Sriyankar J. Inst. Eng. India Ser. B Original Contribution Biclustering is a useful technique to identify subgroups of genes that have same type of expression characteristics with respect to some conditions in microarray gene expression data. This is a complex problem where meta-heuristic algorithms are more suitable to explore the large datasets for finding biclusters of optimal quality. In this paper, there is an attempt for the first time to choose biclusters with respect to shifting and scaling behaviors using Huntington's disease database applying Grey Wolf Optimizer (GWO) along with its proposed modified version namely, Enhanced Search Grey Wolf Optimizer (ES-GWO). ES-GWO incorporates strategies that make the search process more balanced with respect to exploration and exploitation compared to the state-of-the-art techniques (GWO, RM-GWO). The efficacy of ES-GWO is validated on several benchmark instances and compared with the existing meta-heuristic techniques (PSO, HS, Firefly, ABC and DE) based on convergence quality. Finally, from 100 biclusters produced by ES-GWO top 5 were separated. 7 genes common in those 5 biclusters have proved to be biologically significant. Springer India 2022-11-07 /pmc/articles/PMC9640792/ http://dx.doi.org/10.1007/s40031-022-00815-6 Text en © The Institution of Engineers (India) 2022, Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Contribution
Adhikary, Joy
Acharyya, Sriyankar
Identification of Biclusters in Huntington’s Disease Dataset Using a New Variant of Grey Wolf Optimizer
title Identification of Biclusters in Huntington’s Disease Dataset Using a New Variant of Grey Wolf Optimizer
title_full Identification of Biclusters in Huntington’s Disease Dataset Using a New Variant of Grey Wolf Optimizer
title_fullStr Identification of Biclusters in Huntington’s Disease Dataset Using a New Variant of Grey Wolf Optimizer
title_full_unstemmed Identification of Biclusters in Huntington’s Disease Dataset Using a New Variant of Grey Wolf Optimizer
title_short Identification of Biclusters in Huntington’s Disease Dataset Using a New Variant of Grey Wolf Optimizer
title_sort identification of biclusters in huntington’s disease dataset using a new variant of grey wolf optimizer
topic Original Contribution
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9640792/
http://dx.doi.org/10.1007/s40031-022-00815-6
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