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Influence of data sampling methods on the representation of neural spiking activity in vivo

In vivo single-unit recordings distinguish the basal spiking properties of neurons in different experimental settings and disease states. Here, we examined over 300 spike trains recorded from Purkinje cells and cerebellar nuclei neurons to test whether data sampling approaches influence the extracti...

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Autores principales: van der Heijden, Meike E., Brown, Amanda M., Sillitoe, Roy V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9641233/
https://www.ncbi.nlm.nih.gov/pubmed/36388953
http://dx.doi.org/10.1016/j.isci.2022.105429
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author van der Heijden, Meike E.
Brown, Amanda M.
Sillitoe, Roy V.
author_facet van der Heijden, Meike E.
Brown, Amanda M.
Sillitoe, Roy V.
author_sort van der Heijden, Meike E.
collection PubMed
description In vivo single-unit recordings distinguish the basal spiking properties of neurons in different experimental settings and disease states. Here, we examined over 300 spike trains recorded from Purkinje cells and cerebellar nuclei neurons to test whether data sampling approaches influence the extraction of rich descriptors of firing properties. Our analyses included neurons recorded in awake and anesthetized control mice, and disease models of ataxia, dystonia, and tremor. We find that recording duration circumscribes overall representations of firing rate and pattern. Notably, shorter recording durations skew estimates for global firing rate variability toward lower values. We also find that only some populations of neurons in the same mouse are more similar to each other than to neurons recorded in different mice. These data reveal that recording duration and approach are primary considerations when interpreting task-independent single neuron firing properties. If not accounted for, group differences may be concealed or exaggerated.
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spelling pubmed-96412332022-11-15 Influence of data sampling methods on the representation of neural spiking activity in vivo van der Heijden, Meike E. Brown, Amanda M. Sillitoe, Roy V. iScience Article In vivo single-unit recordings distinguish the basal spiking properties of neurons in different experimental settings and disease states. Here, we examined over 300 spike trains recorded from Purkinje cells and cerebellar nuclei neurons to test whether data sampling approaches influence the extraction of rich descriptors of firing properties. Our analyses included neurons recorded in awake and anesthetized control mice, and disease models of ataxia, dystonia, and tremor. We find that recording duration circumscribes overall representations of firing rate and pattern. Notably, shorter recording durations skew estimates for global firing rate variability toward lower values. We also find that only some populations of neurons in the same mouse are more similar to each other than to neurons recorded in different mice. These data reveal that recording duration and approach are primary considerations when interpreting task-independent single neuron firing properties. If not accounted for, group differences may be concealed or exaggerated. Elsevier 2022-10-22 /pmc/articles/PMC9641233/ /pubmed/36388953 http://dx.doi.org/10.1016/j.isci.2022.105429 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
van der Heijden, Meike E.
Brown, Amanda M.
Sillitoe, Roy V.
Influence of data sampling methods on the representation of neural spiking activity in vivo
title Influence of data sampling methods on the representation of neural spiking activity in vivo
title_full Influence of data sampling methods on the representation of neural spiking activity in vivo
title_fullStr Influence of data sampling methods on the representation of neural spiking activity in vivo
title_full_unstemmed Influence of data sampling methods on the representation of neural spiking activity in vivo
title_short Influence of data sampling methods on the representation of neural spiking activity in vivo
title_sort influence of data sampling methods on the representation of neural spiking activity in vivo
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9641233/
https://www.ncbi.nlm.nih.gov/pubmed/36388953
http://dx.doi.org/10.1016/j.isci.2022.105429
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