Cargando…

A novel likely pathogenic variant in the FBXO32 gene associated with dilated cardiomyopathy according to whole‑exome sequencing

BACKGROUND: Familial dilated cardiomyopathy (DCM) is a genetic heart disorder characterized by progressive heart failure and sudden cardiac death. Over 250 genes have been reported in association with DCM; nonetheless, the genetic cause of most DCM patients has been unknown. The goal of the present...

Descripción completa

Detalles Bibliográficos
Autores principales: Ghasemi, Serwa, Mahdavi, Mohammad, Maleki, Majid, Salahshourifar, Iman, Kalayinia, Samira
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9641816/
https://www.ncbi.nlm.nih.gov/pubmed/36344977
http://dx.doi.org/10.1186/s12920-022-01388-5
_version_ 1784826166152003584
author Ghasemi, Serwa
Mahdavi, Mohammad
Maleki, Majid
Salahshourifar, Iman
Kalayinia, Samira
author_facet Ghasemi, Serwa
Mahdavi, Mohammad
Maleki, Majid
Salahshourifar, Iman
Kalayinia, Samira
author_sort Ghasemi, Serwa
collection PubMed
description BACKGROUND: Familial dilated cardiomyopathy (DCM) is a genetic heart disorder characterized by progressive heart failure and sudden cardiac death. Over 250 genes have been reported in association with DCM; nonetheless, the genetic cause of most DCM patients has been unknown. The goal of the present study was to determine the genetic etiology of familial DCM in an Iranian family. METHODS: Whole-exome sequencing was performed to identify the underlying variants in an Iranian consanguineous family with DCM. The presence of the candidate variant was confirmed and screened in available relatives by PCR and Sanger sequencing. The pathogenic effect of the candidate variant was assessed by bioinformatics analysis, homology modeling, and docking. RESULTS: One novel likely pathogenic deletion, c.884_886del: p.Lys295del, in F-box only protein 32 (muscle-specific ubiquitin-E3 ligase protein; FBXO32) was identified. Based on bioinformatics and modeling analysis, c.884_886del was the most probable cause of DCM in the studied family. CONCLUSIONS: Our findings indicate that variants in FBXO32 play a role in recessive DCM. Variants in FBXO32 may disturb the degradation of target proteins in the ubiquitin–proteasome system and lead to severe DCM. We suggest considering this gene variants in patients with recessively inherited DCM.
format Online
Article
Text
id pubmed-9641816
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-96418162022-11-15 A novel likely pathogenic variant in the FBXO32 gene associated with dilated cardiomyopathy according to whole‑exome sequencing Ghasemi, Serwa Mahdavi, Mohammad Maleki, Majid Salahshourifar, Iman Kalayinia, Samira BMC Med Genomics Research BACKGROUND: Familial dilated cardiomyopathy (DCM) is a genetic heart disorder characterized by progressive heart failure and sudden cardiac death. Over 250 genes have been reported in association with DCM; nonetheless, the genetic cause of most DCM patients has been unknown. The goal of the present study was to determine the genetic etiology of familial DCM in an Iranian family. METHODS: Whole-exome sequencing was performed to identify the underlying variants in an Iranian consanguineous family with DCM. The presence of the candidate variant was confirmed and screened in available relatives by PCR and Sanger sequencing. The pathogenic effect of the candidate variant was assessed by bioinformatics analysis, homology modeling, and docking. RESULTS: One novel likely pathogenic deletion, c.884_886del: p.Lys295del, in F-box only protein 32 (muscle-specific ubiquitin-E3 ligase protein; FBXO32) was identified. Based on bioinformatics and modeling analysis, c.884_886del was the most probable cause of DCM in the studied family. CONCLUSIONS: Our findings indicate that variants in FBXO32 play a role in recessive DCM. Variants in FBXO32 may disturb the degradation of target proteins in the ubiquitin–proteasome system and lead to severe DCM. We suggest considering this gene variants in patients with recessively inherited DCM. BioMed Central 2022-11-07 /pmc/articles/PMC9641816/ /pubmed/36344977 http://dx.doi.org/10.1186/s12920-022-01388-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Ghasemi, Serwa
Mahdavi, Mohammad
Maleki, Majid
Salahshourifar, Iman
Kalayinia, Samira
A novel likely pathogenic variant in the FBXO32 gene associated with dilated cardiomyopathy according to whole‑exome sequencing
title A novel likely pathogenic variant in the FBXO32 gene associated with dilated cardiomyopathy according to whole‑exome sequencing
title_full A novel likely pathogenic variant in the FBXO32 gene associated with dilated cardiomyopathy according to whole‑exome sequencing
title_fullStr A novel likely pathogenic variant in the FBXO32 gene associated with dilated cardiomyopathy according to whole‑exome sequencing
title_full_unstemmed A novel likely pathogenic variant in the FBXO32 gene associated with dilated cardiomyopathy according to whole‑exome sequencing
title_short A novel likely pathogenic variant in the FBXO32 gene associated with dilated cardiomyopathy according to whole‑exome sequencing
title_sort novel likely pathogenic variant in the fbxo32 gene associated with dilated cardiomyopathy according to whole‑exome sequencing
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9641816/
https://www.ncbi.nlm.nih.gov/pubmed/36344977
http://dx.doi.org/10.1186/s12920-022-01388-5
work_keys_str_mv AT ghasemiserwa anovellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing
AT mahdavimohammad anovellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing
AT malekimajid anovellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing
AT salahshourifariman anovellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing
AT kalayiniasamira anovellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing
AT ghasemiserwa novellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing
AT mahdavimohammad novellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing
AT malekimajid novellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing
AT salahshourifariman novellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing
AT kalayiniasamira novellikelypathogenicvariantinthefbxo32geneassociatedwithdilatedcardiomyopathyaccordingtowholeexomesequencing