Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

Effectively monitoring the spread of SARS-CoV-2 mutants is essential to efforts to counter the ongoing pandemic. Predicting lineage abundance from wastewater, however, is technically challenging. We show that by sequencing SARS-CoV-2 RNA in wastewater and applying algorithms initially used for trans...

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Detalles Bibliográficos
Autores principales: Baaijens, Jasmijn A., Zulli, Alessandro, Ott, Isabel M., Nika, Ioanna, van der Lugt, Mart J., Petrone, Mary E., Alpert, Tara, Fauver, Joseph R., Kalinich, Chaney C., Vogels, Chantal B. F., Breban, Mallery I., Duvallet, Claire, McElroy, Kyle A., Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika F., Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle L., Simen, Birgitte B., Hanage, William P., Grubaugh, Nathan D., Peccia, Jordan, Baym, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9643916/
https://www.ncbi.nlm.nih.gov/pubmed/36348471
http://dx.doi.org/10.1186/s13059-022-02805-9

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