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The PortaLyzer, a DIY tool that allows environmental DNA extraction in the field

The PortaLyzer is a portable homemade device that allows researchers to perform bead-beating steps commonly found in environmental DNA (eDNA) extraction protocols in the field without access to power. This allows researchers to preserve in situ organism abundance by beginning eDNA extraction quickly...

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Detalles Bibliográficos
Autores principales: Peck, Charlie, Jackobs, Faith, Smith, Emmett
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9644035/
https://www.ncbi.nlm.nih.gov/pubmed/36393914
http://dx.doi.org/10.1016/j.ohx.2022.e00373
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author Peck, Charlie
Jackobs, Faith
Smith, Emmett
author_facet Peck, Charlie
Jackobs, Faith
Smith, Emmett
author_sort Peck, Charlie
collection PubMed
description The PortaLyzer is a portable homemade device that allows researchers to perform bead-beating steps commonly found in environmental DNA (eDNA) extraction protocols in the field without access to power. This allows researchers to preserve in situ organism abundance by beginning eDNA extraction quickly. The PortaLyzer is composed of a variable speed, battery-powered multi-tool and a vortexer adapter plate. We used the PortaLyzer, in conjunction with the Qiagen DNEasy PowerSoil Pro kit, to successfully field process samples taken from the forelands of the Sólheimajökull and Kvíárjökull glaciers in Iceland, as well as soil samples acquired from a prairie in Indiana. Additionally, we provide evidence that samples held in Buffer CD2 of the DNEasy PowerSoil Pro Kit may be transported to traditional lab spaces and processed up to one month after the initial protocol steps, and still provide an equivalent DNA quality and abundance yield as those processed the same day. These improvements to DNA extraction protocols give researchers more flexibility while sampling, shipping and processing eDNA samples.
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spelling pubmed-96440352022-11-15 The PortaLyzer, a DIY tool that allows environmental DNA extraction in the field Peck, Charlie Jackobs, Faith Smith, Emmett HardwareX Article The PortaLyzer is a portable homemade device that allows researchers to perform bead-beating steps commonly found in environmental DNA (eDNA) extraction protocols in the field without access to power. This allows researchers to preserve in situ organism abundance by beginning eDNA extraction quickly. The PortaLyzer is composed of a variable speed, battery-powered multi-tool and a vortexer adapter plate. We used the PortaLyzer, in conjunction with the Qiagen DNEasy PowerSoil Pro kit, to successfully field process samples taken from the forelands of the Sólheimajökull and Kvíárjökull glaciers in Iceland, as well as soil samples acquired from a prairie in Indiana. Additionally, we provide evidence that samples held in Buffer CD2 of the DNEasy PowerSoil Pro Kit may be transported to traditional lab spaces and processed up to one month after the initial protocol steps, and still provide an equivalent DNA quality and abundance yield as those processed the same day. These improvements to DNA extraction protocols give researchers more flexibility while sampling, shipping and processing eDNA samples. Elsevier 2022-10-27 /pmc/articles/PMC9644035/ /pubmed/36393914 http://dx.doi.org/10.1016/j.ohx.2022.e00373 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Peck, Charlie
Jackobs, Faith
Smith, Emmett
The PortaLyzer, a DIY tool that allows environmental DNA extraction in the field
title The PortaLyzer, a DIY tool that allows environmental DNA extraction in the field
title_full The PortaLyzer, a DIY tool that allows environmental DNA extraction in the field
title_fullStr The PortaLyzer, a DIY tool that allows environmental DNA extraction in the field
title_full_unstemmed The PortaLyzer, a DIY tool that allows environmental DNA extraction in the field
title_short The PortaLyzer, a DIY tool that allows environmental DNA extraction in the field
title_sort portalyzer, a diy tool that allows environmental dna extraction in the field
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9644035/
https://www.ncbi.nlm.nih.gov/pubmed/36393914
http://dx.doi.org/10.1016/j.ohx.2022.e00373
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