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Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China

Norovirus is a prominent enteric virus responsible for severe acute gastroenteritis disease burden worldwide. In our current study, we analyzed 7,804 norovirus sequences of human and animals in China which were detected from 1980 to 2020 from GenBank. The GenBank database was searched up to May 2021...

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Autores principales: Li, Manyu, Li, Kejian, Lan, Haiyun, Hao, Xiaotian, Liu, Yan, Zhou, Cheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: De Gruyter 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9644719/
https://www.ncbi.nlm.nih.gov/pubmed/36405234
http://dx.doi.org/10.1515/biol-2022-0511
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author Li, Manyu
Li, Kejian
Lan, Haiyun
Hao, Xiaotian
Liu, Yan
Zhou, Cheng
author_facet Li, Manyu
Li, Kejian
Lan, Haiyun
Hao, Xiaotian
Liu, Yan
Zhou, Cheng
author_sort Li, Manyu
collection PubMed
description Norovirus is a prominent enteric virus responsible for severe acute gastroenteritis disease burden worldwide. In our current study, we analyzed 7,804 norovirus sequences of human and animals in China which were detected from 1980 to 2020 from GenBank. The GenBank database was searched up to May 2021 with the following search terms: “norovirus” or “norwalk virus” and “China.” The 7,804 norovirus sequences were collected and evaluated by phylogenetic analysis using MEGA X software package. The online typing tool (https://www.rivm.nl/mpf/typingtool/norovirus/) was used to confirm the genotypes. There were 36 norovirus genotypes prevailing in China. GII.4 was the most prevalent genotype, and GII.2, GII.3 and GII.17 also emerged during different time periods. Most sequences were detected in East China (41.72%, 3,256/7,804), but different norovirus genotypes were distributed widely across the country. A variety of norovirus genotypes, including GI, GII, GIII, GIV, GV, GVI, GVII and GX, were reported in different animals. Furthermore, a GI.3 sequence detected from animal had high identity with norovirus detected in human from the same region, indicating the potential norovirus zoonotic transmission in China. In conclusion, these results indicated that norovirus sequences with considerable genetic diversity distributed widely in China, with potential reverse zoonotic transmission from human to animals.
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spelling pubmed-96447192022-11-18 Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China Li, Manyu Li, Kejian Lan, Haiyun Hao, Xiaotian Liu, Yan Zhou, Cheng Open Life Sci Research Article Norovirus is a prominent enteric virus responsible for severe acute gastroenteritis disease burden worldwide. In our current study, we analyzed 7,804 norovirus sequences of human and animals in China which were detected from 1980 to 2020 from GenBank. The GenBank database was searched up to May 2021 with the following search terms: “norovirus” or “norwalk virus” and “China.” The 7,804 norovirus sequences were collected and evaluated by phylogenetic analysis using MEGA X software package. The online typing tool (https://www.rivm.nl/mpf/typingtool/norovirus/) was used to confirm the genotypes. There were 36 norovirus genotypes prevailing in China. GII.4 was the most prevalent genotype, and GII.2, GII.3 and GII.17 also emerged during different time periods. Most sequences were detected in East China (41.72%, 3,256/7,804), but different norovirus genotypes were distributed widely across the country. A variety of norovirus genotypes, including GI, GII, GIII, GIV, GV, GVI, GVII and GX, were reported in different animals. Furthermore, a GI.3 sequence detected from animal had high identity with norovirus detected in human from the same region, indicating the potential norovirus zoonotic transmission in China. In conclusion, these results indicated that norovirus sequences with considerable genetic diversity distributed widely in China, with potential reverse zoonotic transmission from human to animals. De Gruyter 2022-11-07 /pmc/articles/PMC9644719/ /pubmed/36405234 http://dx.doi.org/10.1515/biol-2022-0511 Text en © 2022 Manyu Li et al., published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License.
spellingShingle Research Article
Li, Manyu
Li, Kejian
Lan, Haiyun
Hao, Xiaotian
Liu, Yan
Zhou, Cheng
Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China
title Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China
title_full Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China
title_fullStr Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China
title_full_unstemmed Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China
title_short Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China
title_sort investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of china
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9644719/
https://www.ncbi.nlm.nih.gov/pubmed/36405234
http://dx.doi.org/10.1515/biol-2022-0511
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