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Ferrobotic swarms enable accessible and adaptable automated viral testing

Expanding our global testing capacity is critical to preventing and containing pandemics(1–9). Accordingly, accessible and adaptable automated platforms that in decentralized settings perform nucleic acid amplification tests resource-efficiently are required(10–14). Pooled testing can be extremely e...

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Autores principales: Lin, Haisong, Yu, Wenzhuo, A. Sabet, Kiarash, Bogumil, Michael, Zhao, Yichao, Hambalek, Jacob, Lin, Shuyu, Chandrasekaran, Sukantha, Garner, Omai, Di Carlo, Dino, Emaminejad, Sam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9645323/
https://www.ncbi.nlm.nih.gov/pubmed/36352231
http://dx.doi.org/10.1038/s41586-022-05408-3
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author Lin, Haisong
Yu, Wenzhuo
A. Sabet, Kiarash
Bogumil, Michael
Zhao, Yichao
Hambalek, Jacob
Lin, Shuyu
Chandrasekaran, Sukantha
Garner, Omai
Di Carlo, Dino
Emaminejad, Sam
author_facet Lin, Haisong
Yu, Wenzhuo
A. Sabet, Kiarash
Bogumil, Michael
Zhao, Yichao
Hambalek, Jacob
Lin, Shuyu
Chandrasekaran, Sukantha
Garner, Omai
Di Carlo, Dino
Emaminejad, Sam
author_sort Lin, Haisong
collection PubMed
description Expanding our global testing capacity is critical to preventing and containing pandemics(1–9). Accordingly, accessible and adaptable automated platforms that in decentralized settings perform nucleic acid amplification tests resource-efficiently are required(10–14). Pooled testing can be extremely efficient if the pooling strategy is based on local viral prevalence(15–20); however, it requires automation, small sample volume handling and feedback not available in current bulky, capital-intensive liquid handling technologies(21–29). Here we use a swarm of millimetre-sized magnets as mobile robotic agents (‘ferrobots’) for precise and robust handling of magnetized sample droplets and high-fidelity delivery of flexible workflows based on nucleic acid amplification tests to overcome these limitations. Within a palm-sized printed circuit board-based programmable platform, we demonstrated the myriad of laboratory-equivalent operations involved in pooled testing. These operations were guided by an introduced square matrix pooled testing algorithm to identify the samples from infected patients, while maximizing the testing efficiency. We applied this automated technology for the loop-mediated isothermal amplification and detection of the SARS-CoV-2 virus in clinical samples, in which the test results completely matched those obtained off-chip. This technology is easily manufacturable and distributable, and its adoption for viral testing could lead to a 10–300-fold reduction in reagent costs (depending on the viral prevalence) and three orders of magnitude reduction in instrumentation cost. Therefore, it is a promising solution to expand our testing capacity for pandemic preparedness and to reimagine the automated clinical laboratory of the future.
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spelling pubmed-96453232022-11-14 Ferrobotic swarms enable accessible and adaptable automated viral testing Lin, Haisong Yu, Wenzhuo A. Sabet, Kiarash Bogumil, Michael Zhao, Yichao Hambalek, Jacob Lin, Shuyu Chandrasekaran, Sukantha Garner, Omai Di Carlo, Dino Emaminejad, Sam Nature Article Expanding our global testing capacity is critical to preventing and containing pandemics(1–9). Accordingly, accessible and adaptable automated platforms that in decentralized settings perform nucleic acid amplification tests resource-efficiently are required(10–14). Pooled testing can be extremely efficient if the pooling strategy is based on local viral prevalence(15–20); however, it requires automation, small sample volume handling and feedback not available in current bulky, capital-intensive liquid handling technologies(21–29). Here we use a swarm of millimetre-sized magnets as mobile robotic agents (‘ferrobots’) for precise and robust handling of magnetized sample droplets and high-fidelity delivery of flexible workflows based on nucleic acid amplification tests to overcome these limitations. Within a palm-sized printed circuit board-based programmable platform, we demonstrated the myriad of laboratory-equivalent operations involved in pooled testing. These operations were guided by an introduced square matrix pooled testing algorithm to identify the samples from infected patients, while maximizing the testing efficiency. We applied this automated technology for the loop-mediated isothermal amplification and detection of the SARS-CoV-2 virus in clinical samples, in which the test results completely matched those obtained off-chip. This technology is easily manufacturable and distributable, and its adoption for viral testing could lead to a 10–300-fold reduction in reagent costs (depending on the viral prevalence) and three orders of magnitude reduction in instrumentation cost. Therefore, it is a promising solution to expand our testing capacity for pandemic preparedness and to reimagine the automated clinical laboratory of the future. Nature Publishing Group UK 2022-11-09 2022 /pmc/articles/PMC9645323/ /pubmed/36352231 http://dx.doi.org/10.1038/s41586-022-05408-3 Text en © The Author(s), under exclusive licence to Springer Nature Limited 2022, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Lin, Haisong
Yu, Wenzhuo
A. Sabet, Kiarash
Bogumil, Michael
Zhao, Yichao
Hambalek, Jacob
Lin, Shuyu
Chandrasekaran, Sukantha
Garner, Omai
Di Carlo, Dino
Emaminejad, Sam
Ferrobotic swarms enable accessible and adaptable automated viral testing
title Ferrobotic swarms enable accessible and adaptable automated viral testing
title_full Ferrobotic swarms enable accessible and adaptable automated viral testing
title_fullStr Ferrobotic swarms enable accessible and adaptable automated viral testing
title_full_unstemmed Ferrobotic swarms enable accessible and adaptable automated viral testing
title_short Ferrobotic swarms enable accessible and adaptable automated viral testing
title_sort ferrobotic swarms enable accessible and adaptable automated viral testing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9645323/
https://www.ncbi.nlm.nih.gov/pubmed/36352231
http://dx.doi.org/10.1038/s41586-022-05408-3
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