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The need for measurement science in digital pathology

BACKGROUND: Pathology services experienced a surge in demand during the COVID-19 pandemic. Digitalisation of pathology workflows can help to increase throughput, yet many existing digitalisation solutions use non-standardised workflows captured in proprietary data formats and processed by black-box...

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Autores principales: Romanchikova, Marina, Thomas, Spencer Angus, Dexter, Alex, Shaw, Mike, Partarrieau, Ignacio, Smith, Nadia, Venton, Jenny, Adeogun, Michael, Brettle, David, Turpin, Robert James
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9646441/
https://www.ncbi.nlm.nih.gov/pubmed/36405869
http://dx.doi.org/10.1016/j.jpi.2022.100157
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author Romanchikova, Marina
Thomas, Spencer Angus
Dexter, Alex
Shaw, Mike
Partarrieau, Ignacio
Smith, Nadia
Venton, Jenny
Adeogun, Michael
Brettle, David
Turpin, Robert James
author_facet Romanchikova, Marina
Thomas, Spencer Angus
Dexter, Alex
Shaw, Mike
Partarrieau, Ignacio
Smith, Nadia
Venton, Jenny
Adeogun, Michael
Brettle, David
Turpin, Robert James
author_sort Romanchikova, Marina
collection PubMed
description BACKGROUND: Pathology services experienced a surge in demand during the COVID-19 pandemic. Digitalisation of pathology workflows can help to increase throughput, yet many existing digitalisation solutions use non-standardised workflows captured in proprietary data formats and processed by black-box software, yielding data of varying quality. This study presents the views of a UK-led expert group on the barriers to adoption and the required input of measurement science to improve current practices in digital pathology. METHODS: With an aim to support the UK’s efforts in digitalisation of pathology services, this study comprised: (1) a review of existing evidence, (2) an online survey of domain experts, and (3) a workshop with 42 representatives from healthcare, regulatory bodies, pharmaceutical industry, academia, equipment, and software manufacturers. The discussion topics included sample processing, data interoperability, image analysis, equipment calibration, and use of novel imaging modalities. FINDINGS: The lack of data interoperability within the digital pathology workflows hinders data lookup and navigation, according to 80% of attendees. All participants stressed the importance of integrating imaging and non-imaging data for diagnosis, while 80% saw data integration as a priority challenge. 90% identified the benefits of artificial intelligence and machine learning, but identified the need for training and sound performance metrics. Methods for calibration and providing traceability were seen as essential to establish harmonised, reproducible sample processing, and image acquisition pipelines. Vendor-neutral data standards were seen as a “must-have” for providing meaningful data for downstream analysis. Users and vendors need good practice guidance on evaluation of uncertainty, fitness-for-purpose, and reproducibility of artificial intelligence/machine learning tools. All of the above needs to be accompanied by an upskilling of the pathology workforce. CONCLUSIONS: Digital pathology requires interoperable data formats, reproducible and comparable laboratory workflows, and trustworthy computer analysis software. Despite high interest in the use of novel imaging techniques and artificial intelligence tools, their adoption is slowed down by the lack of guidance and evaluation tools to assess the suitability of these techniques for specific clinical question. Measurement science expertise in uncertainty estimation, standardisation, reference materials, and calibration can help establishing reproducibility and comparability between laboratory procedures, yielding high quality data and providing higher confidence in diagnosis.
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spelling pubmed-96464412022-11-15 The need for measurement science in digital pathology Romanchikova, Marina Thomas, Spencer Angus Dexter, Alex Shaw, Mike Partarrieau, Ignacio Smith, Nadia Venton, Jenny Adeogun, Michael Brettle, David Turpin, Robert James J Pathol Inform Original Research Article BACKGROUND: Pathology services experienced a surge in demand during the COVID-19 pandemic. Digitalisation of pathology workflows can help to increase throughput, yet many existing digitalisation solutions use non-standardised workflows captured in proprietary data formats and processed by black-box software, yielding data of varying quality. This study presents the views of a UK-led expert group on the barriers to adoption and the required input of measurement science to improve current practices in digital pathology. METHODS: With an aim to support the UK’s efforts in digitalisation of pathology services, this study comprised: (1) a review of existing evidence, (2) an online survey of domain experts, and (3) a workshop with 42 representatives from healthcare, regulatory bodies, pharmaceutical industry, academia, equipment, and software manufacturers. The discussion topics included sample processing, data interoperability, image analysis, equipment calibration, and use of novel imaging modalities. FINDINGS: The lack of data interoperability within the digital pathology workflows hinders data lookup and navigation, according to 80% of attendees. All participants stressed the importance of integrating imaging and non-imaging data for diagnosis, while 80% saw data integration as a priority challenge. 90% identified the benefits of artificial intelligence and machine learning, but identified the need for training and sound performance metrics. Methods for calibration and providing traceability were seen as essential to establish harmonised, reproducible sample processing, and image acquisition pipelines. Vendor-neutral data standards were seen as a “must-have” for providing meaningful data for downstream analysis. Users and vendors need good practice guidance on evaluation of uncertainty, fitness-for-purpose, and reproducibility of artificial intelligence/machine learning tools. All of the above needs to be accompanied by an upskilling of the pathology workforce. CONCLUSIONS: Digital pathology requires interoperable data formats, reproducible and comparable laboratory workflows, and trustworthy computer analysis software. Despite high interest in the use of novel imaging techniques and artificial intelligence tools, their adoption is slowed down by the lack of guidance and evaluation tools to assess the suitability of these techniques for specific clinical question. Measurement science expertise in uncertainty estimation, standardisation, reference materials, and calibration can help establishing reproducibility and comparability between laboratory procedures, yielding high quality data and providing higher confidence in diagnosis. Elsevier 2022-11-10 /pmc/articles/PMC9646441/ /pubmed/36405869 http://dx.doi.org/10.1016/j.jpi.2022.100157 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Research Article
Romanchikova, Marina
Thomas, Spencer Angus
Dexter, Alex
Shaw, Mike
Partarrieau, Ignacio
Smith, Nadia
Venton, Jenny
Adeogun, Michael
Brettle, David
Turpin, Robert James
The need for measurement science in digital pathology
title The need for measurement science in digital pathology
title_full The need for measurement science in digital pathology
title_fullStr The need for measurement science in digital pathology
title_full_unstemmed The need for measurement science in digital pathology
title_short The need for measurement science in digital pathology
title_sort need for measurement science in digital pathology
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9646441/
https://www.ncbi.nlm.nih.gov/pubmed/36405869
http://dx.doi.org/10.1016/j.jpi.2022.100157
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