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Establishment and validation of evaluation models for post-inflammatory pigmentation abnormalities
Post-inflammatory skin hyper- or hypo-pigmentation is a common occurrence with unclear etiology. There is currently no reliable method to predict skin pigmentation outcomes after inflammation. In this study, we analyzed the 5 GEO datasets to screen for inflammatory-related genes involved in melanoge...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9646533/ https://www.ncbi.nlm.nih.gov/pubmed/36389813 http://dx.doi.org/10.3389/fimmu.2022.991594 |
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author | Zhang, Yushan Zeng, Hongliang Hu, Yibo Jiang, Ling Fu, Chuhan Zhang, Lan Zhang, Fan Zhang, Xiaolin Zhu, Lu Huang, Jinhua Chen, Jing Zeng, Qinghai |
author_facet | Zhang, Yushan Zeng, Hongliang Hu, Yibo Jiang, Ling Fu, Chuhan Zhang, Lan Zhang, Fan Zhang, Xiaolin Zhu, Lu Huang, Jinhua Chen, Jing Zeng, Qinghai |
author_sort | Zhang, Yushan |
collection | PubMed |
description | Post-inflammatory skin hyper- or hypo-pigmentation is a common occurrence with unclear etiology. There is currently no reliable method to predict skin pigmentation outcomes after inflammation. In this study, we analyzed the 5 GEO datasets to screen for inflammatory-related genes involved in melanogenesis, and used candidate cytokines to establish different machine learning (LASSO regression, logistic regression and Random Forest) models to predict the pigmentation outcomes of post-inflammatory skin. Further, to further validate those models, we evaluated the role of these candidate cytokines in pigment cells. We found that IL-37, CXCL13, CXCL1, CXCL2 and IL-19 showed high predictive value in predictive models. All models accurately classified skin samples with different melanogenesis-related gene scores in the training and testing sets (AUC>0.7). Meanwhile, we mainly evaluated the effects of IL-37 in pigment cells, and found that it increased the melanin content and expression of melanogenesis-related genes (MITF, TYR, TYRP1 and DCT), also enhanced tyrosinase activity. In addition, CXCL13, CXCL1, CXCL2 and IL-19 could down-regulate the expression of several melanogenesis-related genes. In conclusion, evaluation models basing on machine learning may be valuable in predicting outcomes of post-inflammatory pigmentation abnormalities. IL-37, CXCL1, CXCL2, CXCL13 and IL-19 are involved in regulating post-inflammatory pigmentation abnormalities. |
format | Online Article Text |
id | pubmed-9646533 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96465332022-11-15 Establishment and validation of evaluation models for post-inflammatory pigmentation abnormalities Zhang, Yushan Zeng, Hongliang Hu, Yibo Jiang, Ling Fu, Chuhan Zhang, Lan Zhang, Fan Zhang, Xiaolin Zhu, Lu Huang, Jinhua Chen, Jing Zeng, Qinghai Front Immunol Immunology Post-inflammatory skin hyper- or hypo-pigmentation is a common occurrence with unclear etiology. There is currently no reliable method to predict skin pigmentation outcomes after inflammation. In this study, we analyzed the 5 GEO datasets to screen for inflammatory-related genes involved in melanogenesis, and used candidate cytokines to establish different machine learning (LASSO regression, logistic regression and Random Forest) models to predict the pigmentation outcomes of post-inflammatory skin. Further, to further validate those models, we evaluated the role of these candidate cytokines in pigment cells. We found that IL-37, CXCL13, CXCL1, CXCL2 and IL-19 showed high predictive value in predictive models. All models accurately classified skin samples with different melanogenesis-related gene scores in the training and testing sets (AUC>0.7). Meanwhile, we mainly evaluated the effects of IL-37 in pigment cells, and found that it increased the melanin content and expression of melanogenesis-related genes (MITF, TYR, TYRP1 and DCT), also enhanced tyrosinase activity. In addition, CXCL13, CXCL1, CXCL2 and IL-19 could down-regulate the expression of several melanogenesis-related genes. In conclusion, evaluation models basing on machine learning may be valuable in predicting outcomes of post-inflammatory pigmentation abnormalities. IL-37, CXCL1, CXCL2, CXCL13 and IL-19 are involved in regulating post-inflammatory pigmentation abnormalities. Frontiers Media S.A. 2022-10-27 /pmc/articles/PMC9646533/ /pubmed/36389813 http://dx.doi.org/10.3389/fimmu.2022.991594 Text en Copyright © 2022 Zhang, Zeng, Hu, Jiang, Fu, Zhang, Zhang, Zhang, Zhu, Huang, Chen and Zeng https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Zhang, Yushan Zeng, Hongliang Hu, Yibo Jiang, Ling Fu, Chuhan Zhang, Lan Zhang, Fan Zhang, Xiaolin Zhu, Lu Huang, Jinhua Chen, Jing Zeng, Qinghai Establishment and validation of evaluation models for post-inflammatory pigmentation abnormalities |
title | Establishment and validation of evaluation models for post-inflammatory pigmentation abnormalities |
title_full | Establishment and validation of evaluation models for post-inflammatory pigmentation abnormalities |
title_fullStr | Establishment and validation of evaluation models for post-inflammatory pigmentation abnormalities |
title_full_unstemmed | Establishment and validation of evaluation models for post-inflammatory pigmentation abnormalities |
title_short | Establishment and validation of evaluation models for post-inflammatory pigmentation abnormalities |
title_sort | establishment and validation of evaluation models for post-inflammatory pigmentation abnormalities |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9646533/ https://www.ncbi.nlm.nih.gov/pubmed/36389813 http://dx.doi.org/10.3389/fimmu.2022.991594 |
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