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Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes
Premature cardiac myocytes derived from human induced pluripotent stem cells (hiPSC-CMs) show heterogeneous action potentials (APs), probably due to different expression patterns of membrane ionic currents. We developed a method for determining expression patterns of functional channels in terms of...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9646722/ https://www.ncbi.nlm.nih.gov/pubmed/36351955 http://dx.doi.org/10.1038/s41598-022-23398-0 |
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author | Kohjitani, Hirohiko Koda, Shigeya Himeno, Yukiko Makiyama, Takeru Yamamoto, Yuta Yoshinaga, Daisuke Wuriyanghai, Yimin Kashiwa, Asami Toyoda, Futoshi Zhang, Yixin Amano, Akira Noma, Akinori Kimura, Takeshi |
author_facet | Kohjitani, Hirohiko Koda, Shigeya Himeno, Yukiko Makiyama, Takeru Yamamoto, Yuta Yoshinaga, Daisuke Wuriyanghai, Yimin Kashiwa, Asami Toyoda, Futoshi Zhang, Yixin Amano, Akira Noma, Akinori Kimura, Takeshi |
author_sort | Kohjitani, Hirohiko |
collection | PubMed |
description | Premature cardiac myocytes derived from human induced pluripotent stem cells (hiPSC-CMs) show heterogeneous action potentials (APs), probably due to different expression patterns of membrane ionic currents. We developed a method for determining expression patterns of functional channels in terms of whole-cell ionic conductance (G(x)) using individual spontaneous AP configurations. It has been suggested that apparently identical AP configurations can be obtained using different sets of ionic currents in mathematical models of cardiac membrane excitation. If so, the inverse problem of G(x) estimation might not be solved. We computationally tested the feasibility of the gradient-based optimization method. For a realistic examination, conventional 'cell-specific models' were prepared by superimposing the model output of AP on each experimental AP recorded by conventional manual adjustment of G(x)s of the baseline model. G(x)s of 4–6 major ionic currents of the 'cell-specific models' were randomized within a range of ± 5–15% and used as an initial parameter set for the gradient-based automatic G(x)s recovery by decreasing the mean square error (MSE) between the target and model output. Plotting all data points of the MSE–G(x) relationship during optimization revealed progressive convergence of the randomized population of G(x)s to the original value of the cell-specific model with decreasing MSE. The absence of any other local minimum in the global search space was confirmed by mapping the MSE by randomizing G(x)s over a range of 0.1–10 times the control. No additional local minimum MSE was obvious in the whole parameter space, in addition to the global minimum of MSE at the default model parameter. |
format | Online Article Text |
id | pubmed-9646722 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-96467222022-11-15 Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes Kohjitani, Hirohiko Koda, Shigeya Himeno, Yukiko Makiyama, Takeru Yamamoto, Yuta Yoshinaga, Daisuke Wuriyanghai, Yimin Kashiwa, Asami Toyoda, Futoshi Zhang, Yixin Amano, Akira Noma, Akinori Kimura, Takeshi Sci Rep Article Premature cardiac myocytes derived from human induced pluripotent stem cells (hiPSC-CMs) show heterogeneous action potentials (APs), probably due to different expression patterns of membrane ionic currents. We developed a method for determining expression patterns of functional channels in terms of whole-cell ionic conductance (G(x)) using individual spontaneous AP configurations. It has been suggested that apparently identical AP configurations can be obtained using different sets of ionic currents in mathematical models of cardiac membrane excitation. If so, the inverse problem of G(x) estimation might not be solved. We computationally tested the feasibility of the gradient-based optimization method. For a realistic examination, conventional 'cell-specific models' were prepared by superimposing the model output of AP on each experimental AP recorded by conventional manual adjustment of G(x)s of the baseline model. G(x)s of 4–6 major ionic currents of the 'cell-specific models' were randomized within a range of ± 5–15% and used as an initial parameter set for the gradient-based automatic G(x)s recovery by decreasing the mean square error (MSE) between the target and model output. Plotting all data points of the MSE–G(x) relationship during optimization revealed progressive convergence of the randomized population of G(x)s to the original value of the cell-specific model with decreasing MSE. The absence of any other local minimum in the global search space was confirmed by mapping the MSE by randomizing G(x)s over a range of 0.1–10 times the control. No additional local minimum MSE was obvious in the whole parameter space, in addition to the global minimum of MSE at the default model parameter. Nature Publishing Group UK 2022-11-09 /pmc/articles/PMC9646722/ /pubmed/36351955 http://dx.doi.org/10.1038/s41598-022-23398-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Kohjitani, Hirohiko Koda, Shigeya Himeno, Yukiko Makiyama, Takeru Yamamoto, Yuta Yoshinaga, Daisuke Wuriyanghai, Yimin Kashiwa, Asami Toyoda, Futoshi Zhang, Yixin Amano, Akira Noma, Akinori Kimura, Takeshi Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes |
title | Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes |
title_full | Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes |
title_fullStr | Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes |
title_full_unstemmed | Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes |
title_short | Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes |
title_sort | gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9646722/ https://www.ncbi.nlm.nih.gov/pubmed/36351955 http://dx.doi.org/10.1038/s41598-022-23398-0 |
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