Cargando…

A modular and reusable model of epithelial transport in the proximal convoluted tubule

We review a collection of published renal epithelial transport models, from which we build a consistent and reusable mathematical model able to reproduce many observations and predictions from the literature. The flexible modular model we present here can be adapted to specific configurations of epi...

Descripción completa

Detalles Bibliográficos
Autores principales: Noroozbabaee, Leyla, Blanco, Pablo J., Safaei, Soroush, Nickerson, David P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9648790/
https://www.ncbi.nlm.nih.gov/pubmed/36355848
http://dx.doi.org/10.1371/journal.pone.0275837
_version_ 1784827654957957120
author Noroozbabaee, Leyla
Blanco, Pablo J.
Safaei, Soroush
Nickerson, David P.
author_facet Noroozbabaee, Leyla
Blanco, Pablo J.
Safaei, Soroush
Nickerson, David P.
author_sort Noroozbabaee, Leyla
collection PubMed
description We review a collection of published renal epithelial transport models, from which we build a consistent and reusable mathematical model able to reproduce many observations and predictions from the literature. The flexible modular model we present here can be adapted to specific configurations of epithelial transport, and in this work we focus on transport in the proximal convoluted tubule of the renal nephron. Our mathematical model of the epithelial proximal convoluted tubule describes the cellular and subcellular mechanisms of the transporters, intracellular buffering, solute fluxes, and other processes. We provide free and open access to the Python implementation to ensure our multiscale proximal tubule model is accessible; enabling the reader to explore the model through setting their own simulations, reproducibility tests, and sensitivity analyses.
format Online
Article
Text
id pubmed-9648790
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-96487902022-11-15 A modular and reusable model of epithelial transport in the proximal convoluted tubule Noroozbabaee, Leyla Blanco, Pablo J. Safaei, Soroush Nickerson, David P. PLoS One Research Article We review a collection of published renal epithelial transport models, from which we build a consistent and reusable mathematical model able to reproduce many observations and predictions from the literature. The flexible modular model we present here can be adapted to specific configurations of epithelial transport, and in this work we focus on transport in the proximal convoluted tubule of the renal nephron. Our mathematical model of the epithelial proximal convoluted tubule describes the cellular and subcellular mechanisms of the transporters, intracellular buffering, solute fluxes, and other processes. We provide free and open access to the Python implementation to ensure our multiscale proximal tubule model is accessible; enabling the reader to explore the model through setting their own simulations, reproducibility tests, and sensitivity analyses. Public Library of Science 2022-11-10 /pmc/articles/PMC9648790/ /pubmed/36355848 http://dx.doi.org/10.1371/journal.pone.0275837 Text en © 2022 Noroozbabaee et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Noroozbabaee, Leyla
Blanco, Pablo J.
Safaei, Soroush
Nickerson, David P.
A modular and reusable model of epithelial transport in the proximal convoluted tubule
title A modular and reusable model of epithelial transport in the proximal convoluted tubule
title_full A modular and reusable model of epithelial transport in the proximal convoluted tubule
title_fullStr A modular and reusable model of epithelial transport in the proximal convoluted tubule
title_full_unstemmed A modular and reusable model of epithelial transport in the proximal convoluted tubule
title_short A modular and reusable model of epithelial transport in the proximal convoluted tubule
title_sort modular and reusable model of epithelial transport in the proximal convoluted tubule
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9648790/
https://www.ncbi.nlm.nih.gov/pubmed/36355848
http://dx.doi.org/10.1371/journal.pone.0275837
work_keys_str_mv AT noroozbabaeeleyla amodularandreusablemodelofepithelialtransportintheproximalconvolutedtubule
AT blancopabloj amodularandreusablemodelofepithelialtransportintheproximalconvolutedtubule
AT safaeisoroush amodularandreusablemodelofepithelialtransportintheproximalconvolutedtubule
AT nickersondavidp amodularandreusablemodelofepithelialtransportintheproximalconvolutedtubule
AT noroozbabaeeleyla modularandreusablemodelofepithelialtransportintheproximalconvolutedtubule
AT blancopabloj modularandreusablemodelofepithelialtransportintheproximalconvolutedtubule
AT safaeisoroush modularandreusablemodelofepithelialtransportintheproximalconvolutedtubule
AT nickersondavidp modularandreusablemodelofepithelialtransportintheproximalconvolutedtubule