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Prediction of the disease course in Friedreich ataxia
We explored whether disease severity of Friedreich ataxia can be predicted using data from clinical examinations. From the database of the European Friedreich Ataxia Consortium for Translational Studies (EFACTS) data from up to five examinations of 602 patients with genetically confirmed FRDA was in...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9649725/ https://www.ncbi.nlm.nih.gov/pubmed/36357508 http://dx.doi.org/10.1038/s41598-022-23666-z |
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author | Hohenfeld, Christian Terstiege, Ulrich Dogan, Imis Giunti, Paola Parkinson, Michael H. Mariotti, Caterina Nanetti, Lorenzo Fichera, Mario Durr, Alexandra Ewenczyk, Claire Boesch, Sylvia Nachbauer, Wolfgang Klopstock, Thomas Stendel, Claudia Rodríguez de Rivera Garrido, Francisco Javier Schöls, Ludger Hayer, Stefanie N. Klockgether, Thomas Giordano, Ilaria Didszun, Claire Rai, Myriam Pandolfo, Massimo Rauhut, Holger Schulz, Jörg B. Reetz, Kathrin |
author_facet | Hohenfeld, Christian Terstiege, Ulrich Dogan, Imis Giunti, Paola Parkinson, Michael H. Mariotti, Caterina Nanetti, Lorenzo Fichera, Mario Durr, Alexandra Ewenczyk, Claire Boesch, Sylvia Nachbauer, Wolfgang Klopstock, Thomas Stendel, Claudia Rodríguez de Rivera Garrido, Francisco Javier Schöls, Ludger Hayer, Stefanie N. Klockgether, Thomas Giordano, Ilaria Didszun, Claire Rai, Myriam Pandolfo, Massimo Rauhut, Holger Schulz, Jörg B. Reetz, Kathrin |
author_sort | Hohenfeld, Christian |
collection | PubMed |
description | We explored whether disease severity of Friedreich ataxia can be predicted using data from clinical examinations. From the database of the European Friedreich Ataxia Consortium for Translational Studies (EFACTS) data from up to five examinations of 602 patients with genetically confirmed FRDA was included. Clinical instruments and important symptoms of FRDA were identified as targets for prediction, while variables such as genetics, age of disease onset and first symptom of the disease were used as predictors. We used modelling techniques including generalised linear models, support-vector-machines and decision trees. The scale for rating and assessment of ataxia (SARA) and the activities of daily living (ADL) could be predicted with predictive errors quantified by root-mean-squared-errors (RMSE) of 6.49 and 5.83, respectively. Also, we were able to achieve reasonable performance for loss of ambulation (ROC-AUC score of 0.83). However, predictions for the SCA functional assessment (SCAFI) and presence of cardiological symptoms were difficult. In conclusion, we demonstrate that some clinical features of FRDA can be predicted with reasonable error; being a first step towards future clinical applications of predictive modelling. In contrast, targets where predictions were difficult raise the question whether there are yet unknown variables driving the clinical phenotype of FRDA. |
format | Online Article Text |
id | pubmed-9649725 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-96497252022-11-15 Prediction of the disease course in Friedreich ataxia Hohenfeld, Christian Terstiege, Ulrich Dogan, Imis Giunti, Paola Parkinson, Michael H. Mariotti, Caterina Nanetti, Lorenzo Fichera, Mario Durr, Alexandra Ewenczyk, Claire Boesch, Sylvia Nachbauer, Wolfgang Klopstock, Thomas Stendel, Claudia Rodríguez de Rivera Garrido, Francisco Javier Schöls, Ludger Hayer, Stefanie N. Klockgether, Thomas Giordano, Ilaria Didszun, Claire Rai, Myriam Pandolfo, Massimo Rauhut, Holger Schulz, Jörg B. Reetz, Kathrin Sci Rep Article We explored whether disease severity of Friedreich ataxia can be predicted using data from clinical examinations. From the database of the European Friedreich Ataxia Consortium for Translational Studies (EFACTS) data from up to five examinations of 602 patients with genetically confirmed FRDA was included. Clinical instruments and important symptoms of FRDA were identified as targets for prediction, while variables such as genetics, age of disease onset and first symptom of the disease were used as predictors. We used modelling techniques including generalised linear models, support-vector-machines and decision trees. The scale for rating and assessment of ataxia (SARA) and the activities of daily living (ADL) could be predicted with predictive errors quantified by root-mean-squared-errors (RMSE) of 6.49 and 5.83, respectively. Also, we were able to achieve reasonable performance for loss of ambulation (ROC-AUC score of 0.83). However, predictions for the SCA functional assessment (SCAFI) and presence of cardiological symptoms were difficult. In conclusion, we demonstrate that some clinical features of FRDA can be predicted with reasonable error; being a first step towards future clinical applications of predictive modelling. In contrast, targets where predictions were difficult raise the question whether there are yet unknown variables driving the clinical phenotype of FRDA. Nature Publishing Group UK 2022-11-10 /pmc/articles/PMC9649725/ /pubmed/36357508 http://dx.doi.org/10.1038/s41598-022-23666-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Hohenfeld, Christian Terstiege, Ulrich Dogan, Imis Giunti, Paola Parkinson, Michael H. Mariotti, Caterina Nanetti, Lorenzo Fichera, Mario Durr, Alexandra Ewenczyk, Claire Boesch, Sylvia Nachbauer, Wolfgang Klopstock, Thomas Stendel, Claudia Rodríguez de Rivera Garrido, Francisco Javier Schöls, Ludger Hayer, Stefanie N. Klockgether, Thomas Giordano, Ilaria Didszun, Claire Rai, Myriam Pandolfo, Massimo Rauhut, Holger Schulz, Jörg B. Reetz, Kathrin Prediction of the disease course in Friedreich ataxia |
title | Prediction of the disease course in Friedreich ataxia |
title_full | Prediction of the disease course in Friedreich ataxia |
title_fullStr | Prediction of the disease course in Friedreich ataxia |
title_full_unstemmed | Prediction of the disease course in Friedreich ataxia |
title_short | Prediction of the disease course in Friedreich ataxia |
title_sort | prediction of the disease course in friedreich ataxia |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9649725/ https://www.ncbi.nlm.nih.gov/pubmed/36357508 http://dx.doi.org/10.1038/s41598-022-23666-z |
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