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Complete chloroplast genome sequences of Phlomis fruticosa and Phlomoides strigosa and comparative analysis of the genus Phlomis sensu lato (Lamiaceae)
The taxonomic terms “Phlomis” and “Phlomoides” had been used to describe two sections within the genus Phlomis belonging to the Lamiaceae family. Recently, phylogenetic analyses using molecular markers showed that Phlomis and Phlomoides formed two monophyletic clades, and thus they are generally acc...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9650320/ https://www.ncbi.nlm.nih.gov/pubmed/36388530 http://dx.doi.org/10.3389/fpls.2022.1022273 |
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author | Zhao, Wei Guo, Lirong Yang, Yu Wang, Yan Yang, Li Wei, Cuimei Guo, Jian Yan, Kan Chen, Haijuan Yang, Zhigang Li, Yimeng |
author_facet | Zhao, Wei Guo, Lirong Yang, Yu Wang, Yan Yang, Li Wei, Cuimei Guo, Jian Yan, Kan Chen, Haijuan Yang, Zhigang Li, Yimeng |
author_sort | Zhao, Wei |
collection | PubMed |
description | The taxonomic terms “Phlomis” and “Phlomoides” had been used to describe two sections within the genus Phlomis belonging to the Lamiaceae family. Recently, phylogenetic analyses using molecular markers showed that Phlomis and Phlomoides formed two monophyletic clades, and thus they are generally accepted as separate genera. In this study, we assembled the complete chloroplast genome of Phlomis fruticosa, which is the first reported chloroplast genome belonging to Phlomis genus, as well as the complete chloroplast genome of Phlomoides strigosa belonging to Phlomoides genus. The results showed that the length of chloroplast genome was 151,639 bp (Phlomis fruticosa) and 152,432 bp (Phlomoides strigosa), with conserved large single copy regions, small single copy regions, and inverted repeat regions. 121 genes in Phlomis fruticosa and 120 genes in Phlomoides strigosa were annotated. The chloroplast genomes of Phlomis fruticosa, Phlomoides strigosa, and three reported Phlomoides species, as well as those of 51 species from the Lamiaceae family, which covered 12 subfamilies, were subjected to phylogenetic analyses. The Phlomis and Phlomoides species were split into two groups, which were well supported by both maximum likelihood and Bayesian inference tree analyses. Our study provided further evidence to recognize Phlomis and Phlomoides as independent genera. |
format | Online Article Text |
id | pubmed-9650320 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96503202022-11-15 Complete chloroplast genome sequences of Phlomis fruticosa and Phlomoides strigosa and comparative analysis of the genus Phlomis sensu lato (Lamiaceae) Zhao, Wei Guo, Lirong Yang, Yu Wang, Yan Yang, Li Wei, Cuimei Guo, Jian Yan, Kan Chen, Haijuan Yang, Zhigang Li, Yimeng Front Plant Sci Plant Science The taxonomic terms “Phlomis” and “Phlomoides” had been used to describe two sections within the genus Phlomis belonging to the Lamiaceae family. Recently, phylogenetic analyses using molecular markers showed that Phlomis and Phlomoides formed two monophyletic clades, and thus they are generally accepted as separate genera. In this study, we assembled the complete chloroplast genome of Phlomis fruticosa, which is the first reported chloroplast genome belonging to Phlomis genus, as well as the complete chloroplast genome of Phlomoides strigosa belonging to Phlomoides genus. The results showed that the length of chloroplast genome was 151,639 bp (Phlomis fruticosa) and 152,432 bp (Phlomoides strigosa), with conserved large single copy regions, small single copy regions, and inverted repeat regions. 121 genes in Phlomis fruticosa and 120 genes in Phlomoides strigosa were annotated. The chloroplast genomes of Phlomis fruticosa, Phlomoides strigosa, and three reported Phlomoides species, as well as those of 51 species from the Lamiaceae family, which covered 12 subfamilies, were subjected to phylogenetic analyses. The Phlomis and Phlomoides species were split into two groups, which were well supported by both maximum likelihood and Bayesian inference tree analyses. Our study provided further evidence to recognize Phlomis and Phlomoides as independent genera. Frontiers Media S.A. 2022-10-28 /pmc/articles/PMC9650320/ /pubmed/36388530 http://dx.doi.org/10.3389/fpls.2022.1022273 Text en Copyright © 2022 Zhao, Guo, Yang, Wang, Yang, Wei, Guo, Yan, Chen, Yang and Li https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Zhao, Wei Guo, Lirong Yang, Yu Wang, Yan Yang, Li Wei, Cuimei Guo, Jian Yan, Kan Chen, Haijuan Yang, Zhigang Li, Yimeng Complete chloroplast genome sequences of Phlomis fruticosa and Phlomoides strigosa and comparative analysis of the genus Phlomis sensu lato (Lamiaceae) |
title | Complete chloroplast genome sequences of Phlomis fruticosa and Phlomoides strigosa and comparative analysis of the genus Phlomis sensu lato (Lamiaceae) |
title_full | Complete chloroplast genome sequences of Phlomis fruticosa and Phlomoides strigosa and comparative analysis of the genus Phlomis sensu lato (Lamiaceae) |
title_fullStr | Complete chloroplast genome sequences of Phlomis fruticosa and Phlomoides strigosa and comparative analysis of the genus Phlomis sensu lato (Lamiaceae) |
title_full_unstemmed | Complete chloroplast genome sequences of Phlomis fruticosa and Phlomoides strigosa and comparative analysis of the genus Phlomis sensu lato (Lamiaceae) |
title_short | Complete chloroplast genome sequences of Phlomis fruticosa and Phlomoides strigosa and comparative analysis of the genus Phlomis sensu lato (Lamiaceae) |
title_sort | complete chloroplast genome sequences of phlomis fruticosa and phlomoides strigosa and comparative analysis of the genus phlomis sensu lato (lamiaceae) |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9650320/ https://www.ncbi.nlm.nih.gov/pubmed/36388530 http://dx.doi.org/10.3389/fpls.2022.1022273 |
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