Cargando…

A maximum-type microbial differential abundance test with application to high-dimensional microbiome data analyses

BACKGROUND: High-throughput metagenomic sequencing technologies have shown prominent advantages over traditional pathogen detection methods, bringing great potential in clinical pathogen diagnosis and treatment of infectious diseases. Nevertheless, how to accurately detect the difference in microbio...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Zhengbang, Yu, Xiaochen, Guo, Hongping, Lee, TingFang, Hu, Jiyuan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2022
Materias:	Cellular and Infection Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9650337/ https://www.ncbi.nlm.nih.gov/pubmed/36389165 http://dx.doi.org/10.3389/fcimb.2022.988717

Ejemplares similares

Poor Unstable Midgut Microbiome of Hard Ticks Contrasts With Abundant and Stable Monospecific Microbiome in Ovaries
por: Guizzo, Melina Garcia, et al.
Publicado: (2020)

Challenges and insights in the exploration of the low abundance human ocular surface microbiome
por: Herzog, Elio L., et al.
Publicado: (2023)

Low-Abundant Microorganisms: The Human Microbiome’s Dark Matter, a Scoping Review
por: de Cena, Jéssica Alves, et al.
Publicado: (2021)

Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation
por: Siddiqui, Nazema Y., et al.
Publicado: (2022)

Integrated Analyses of Gut Microbiome and Host Metabolome in Children With Henoch-Schönlein Purpura
por: Wen, Min, et al.
Publicado: (2022)

An Innovative Protocol for Metaproteomic Analyses of Microbial Pathogens in Cystic Fibrosis Sputum
por: Graf, Alexander C., et al.
Publicado: (2021)

Evaluation of Methods for the Extraction of Microbial DNA From Vaginal Swabs Used for Microbiome Studies
por: Mattei, Valentina, et al.
Publicado: (2019)

Respiratory immune status and microbiome in recovered COVID-19 patients revealed by metatranscriptomic analyses
por: Meng, Huan, et al.
Publicado: (2022)

The effect of low-abundance OTU filtering methods on the reliability and variability of microbial composition assessed by 16S rRNA amplicon sequencing
por: Nikodemova, Maria, et al.
Publicado: (2023)

Microbial-Driven Immunological Memory and Its Potential Role in Microbiome Editing for the Prevention of Colorectal Cancer
por: Campillo-Gimenez, Laure, et al.
Publicado: (2021)

Increased abundance of bacteria of the family Muribaculaceae achieved by fecal microbiome transplantation correlates with the inhibition of kidney calcium oxalate stone deposition in experimental rats
por: Wang, Yan, et al.
Publicado: (2023)

Psychobiotics and fecal microbial transplantation for autism and attention-deficit/hyperactivity disorder: microbiome modulation and therapeutic mechanisms
por: Kwak, Min-jin, et al.
Publicado: (2023)

Profiling of the Conjunctival Bacterial Microbiota Reveals the Feasibility of Utilizing a Microbiome-Based Machine Learning Model to Differentially Diagnose Microbial Keratitis and the Core Components of the Conjunctival Bacterial Interaction Network
por: Ren, Zhichao, et al.
Publicado: (2022)

Characterization of Differentially Abundant Proteins Among Leishmania (Viannia) braziliensis Strains Isolated From Atypical or Typical Lesions
por: Esteves, Bárbara B., et al.
Publicado: (2022)

Differential Microbial Signature Associated With Benign Prostatic Hyperplasia and Prostate Cancer
por: Sarkar, Purandar, et al.
Publicado: (2022)

The Fungal Gut Microbiome Exhibits Reduced Diversity and Increased Relative Abundance of Ascomycota in Severe COVID-19 Illness and Distinct Interconnected Communities in SARS-CoV-2 Positive Patients
por: Reinold, Johanna, et al.
Publicado: (2022)

Microbiome–transcriptome analysis reveals that dietary supplementation with macleaya cordata extract alters multiple immune pathways with minimal impact on microbial structure
por: Wu, Jian, et al.
Publicado: (2023)

Microbial interaction-induced siderophore dynamics lead to phenotypic differentiation of Staphylococcus aureus
por: Rajapitamahuni, Soundarya, et al.
Publicado: (2023)

Gut Microbiome and Serum Metabolome Analyses Identify Unsaturated Fatty Acids and Butanoate Metabolism Induced by Gut Microbiota in Patients With Chronic Spontaneous Urticaria
por: Wang, Detong, et al.
Publicado: (2020)

Correlation of the gut microbiome and immune-related adverse events in gastrointestinal cancer patients treated with immune checkpoint inhibitors
por: Zhang, Yifan, et al.
Publicado: (2023)

Microbiotyping the Sinonasal Microbiome
por: Bassiouni, Ahmed, et al.
Publicado: (2020)

The Fungal Microbiome and Asthma
por: van Tilburg Bernardes, Erik, et al.
Publicado: (2020)

Roseburia Abundance Associates With Severity, Evolution and Outcome of Acute Ischemic Stroke
por: Gu, Mengmeng, et al.
Publicado: (2021)

Lower gut abundance of Eubacterium rectale is linked to COVID-19 mortality
por: Liu, Yingzhi, et al.
Publicado: (2023)

Alterations to the Lung Microbiome in Idiopathic Pulmonary Fibrosis Patients
por: Tong, Xunliang, et al.
Publicado: (2019)

Do we need to change our perspective about gut biomarkers? A public data mining approach to identify differentially abundant bacteria in intestinal inflammatory diseases
por: Vega, Laura, et al.
Publicado: (2022)

Characterization of the oral and gut microbiome in children with obesity aged 3 to 5 years
por: Ma, Ting, et al.
Publicado: (2023)

Editorial: Interplay of Infection and Microbiome
por: Huston, Wilhelmina M., et al.
Publicado: (2020)

Viral Infections, the Microbiome, and Probiotics
por: Harper, Ashton, et al.
Publicado: (2021)

The Oral Microbiome in Periodontal Health
por: Lenartova, Magdalena, et al.
Publicado: (2021)

The Interaction Between the Microbiome and Tumors
por: Zong, Yawen, et al.
Publicado: (2021)

Maternal vaginal microbiome composition does not affect development of the infant gut microbiome in early life
por: Dos Santos, Scott J., et al.
Publicado: (2023)

Association Between Serum Thyroid-Stimulating Hormone Levels and Salivary Microbiome Shifts
por: Dong, Ting, et al.
Publicado: (2021)

Combined microbiome and metabolome analysis of gut microbiota and metabolite interactions in chronic spontaneous urticaria
por: Luo, Zhen, et al.
Publicado: (2023)

Proteomic analyses of smear-positive/negative tuberculosis patients uncover differential antigen-presenting cell activation and lipid metabolism
por: Ju, Yingjiao, et al.
Publicado: (2023)

Insight Into the Potential Value of Gut Microbial Signatures for Prediction of Gestational Anemia
por: Wei, Hongcheng, et al.
Publicado: (2021)

Dysbiosis of the Gut Microbiome in Lung Cancer
por: Zhuang, He, et al.
Publicado: (2019)

Methodological Insight Into Mosquito Microbiome Studies
por: Rodríguez-Ruano, Sonia M., et al.
Publicado: (2020)

Role of the Microbiome in the Pathogenesis of COVID-19
por: De, Rituparna, et al.
Publicado: (2022)

Editorial: New techniques in microbiome research
por: Lin, Tao
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_mtqj630l1977ipoluiit94m053