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Using Catalysis to Drive Chemistry Away from Equilibrium: Relating Kinetic Asymmetry, Power Strokes, and the Curtin–Hammett Principle in Brownian Ratchets
[Image: see text] Chemically fueled autonomous molecular machines are catalysis-driven systems governed by Brownian information ratchet mechanisms. One fundamental principle behind their operation is kinetic asymmetry, which quantifies the directionality of molecular motors. However, it is difficult...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9650702/ https://www.ncbi.nlm.nih.gov/pubmed/36286995 http://dx.doi.org/10.1021/jacs.2c08723 |
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author | Amano, Shuntaro Esposito, Massimiliano Kreidt, Elisabeth Leigh, David A. Penocchio, Emanuele Roberts, Benjamin M. W. |
author_facet | Amano, Shuntaro Esposito, Massimiliano Kreidt, Elisabeth Leigh, David A. Penocchio, Emanuele Roberts, Benjamin M. W. |
author_sort | Amano, Shuntaro |
collection | PubMed |
description | [Image: see text] Chemically fueled autonomous molecular machines are catalysis-driven systems governed by Brownian information ratchet mechanisms. One fundamental principle behind their operation is kinetic asymmetry, which quantifies the directionality of molecular motors. However, it is difficult for synthetic chemists to apply this concept to molecular design because kinetic asymmetry is usually introduced in abstract mathematical terms involving experimentally inaccessible parameters. Furthermore, two seemingly contradictory mechanisms have been proposed for chemically driven autonomous molecular machines: Brownian ratchet and power stroke mechanisms. This Perspective addresses both these issues, providing accessible and experimentally useful design principles for catalysis-driven molecular machinery. We relate kinetic asymmetry to the Curtin–Hammett principle using a synthetic rotary motor and a kinesin walker as illustrative examples. Our approach describes these molecular motors in terms of the Brownian ratchet mechanism but pinpoints both chemical gating and power strokes as tunable design elements that can affect kinetic asymmetry. We explain why this approach to kinetic asymmetry is consistent with previous ones and outline conditions where power strokes can be useful design elements. Finally, we discuss the role of information, a concept used with different meanings in the literature. We hope that this Perspective will be accessible to a broad range of chemists, clarifying the parameters that can be usefully controlled in the design and synthesis of molecular machines and related systems. It may also aid a more comprehensive and interdisciplinary understanding of biomolecular machinery. |
format | Online Article Text |
id | pubmed-9650702 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-96507022022-11-15 Using Catalysis to Drive Chemistry Away from Equilibrium: Relating Kinetic Asymmetry, Power Strokes, and the Curtin–Hammett Principle in Brownian Ratchets Amano, Shuntaro Esposito, Massimiliano Kreidt, Elisabeth Leigh, David A. Penocchio, Emanuele Roberts, Benjamin M. W. J Am Chem Soc [Image: see text] Chemically fueled autonomous molecular machines are catalysis-driven systems governed by Brownian information ratchet mechanisms. One fundamental principle behind their operation is kinetic asymmetry, which quantifies the directionality of molecular motors. However, it is difficult for synthetic chemists to apply this concept to molecular design because kinetic asymmetry is usually introduced in abstract mathematical terms involving experimentally inaccessible parameters. Furthermore, two seemingly contradictory mechanisms have been proposed for chemically driven autonomous molecular machines: Brownian ratchet and power stroke mechanisms. This Perspective addresses both these issues, providing accessible and experimentally useful design principles for catalysis-driven molecular machinery. We relate kinetic asymmetry to the Curtin–Hammett principle using a synthetic rotary motor and a kinesin walker as illustrative examples. Our approach describes these molecular motors in terms of the Brownian ratchet mechanism but pinpoints both chemical gating and power strokes as tunable design elements that can affect kinetic asymmetry. We explain why this approach to kinetic asymmetry is consistent with previous ones and outline conditions where power strokes can be useful design elements. Finally, we discuss the role of information, a concept used with different meanings in the literature. We hope that this Perspective will be accessible to a broad range of chemists, clarifying the parameters that can be usefully controlled in the design and synthesis of molecular machines and related systems. It may also aid a more comprehensive and interdisciplinary understanding of biomolecular machinery. American Chemical Society 2022-10-26 2022-11-09 /pmc/articles/PMC9650702/ /pubmed/36286995 http://dx.doi.org/10.1021/jacs.2c08723 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Amano, Shuntaro Esposito, Massimiliano Kreidt, Elisabeth Leigh, David A. Penocchio, Emanuele Roberts, Benjamin M. W. Using Catalysis to Drive Chemistry Away from Equilibrium: Relating Kinetic Asymmetry, Power Strokes, and the Curtin–Hammett Principle in Brownian Ratchets |
title | Using Catalysis to
Drive Chemistry Away from Equilibrium:
Relating Kinetic Asymmetry, Power Strokes, and the Curtin–Hammett
Principle in Brownian Ratchets |
title_full | Using Catalysis to
Drive Chemistry Away from Equilibrium:
Relating Kinetic Asymmetry, Power Strokes, and the Curtin–Hammett
Principle in Brownian Ratchets |
title_fullStr | Using Catalysis to
Drive Chemistry Away from Equilibrium:
Relating Kinetic Asymmetry, Power Strokes, and the Curtin–Hammett
Principle in Brownian Ratchets |
title_full_unstemmed | Using Catalysis to
Drive Chemistry Away from Equilibrium:
Relating Kinetic Asymmetry, Power Strokes, and the Curtin–Hammett
Principle in Brownian Ratchets |
title_short | Using Catalysis to
Drive Chemistry Away from Equilibrium:
Relating Kinetic Asymmetry, Power Strokes, and the Curtin–Hammett
Principle in Brownian Ratchets |
title_sort | using catalysis to
drive chemistry away from equilibrium:
relating kinetic asymmetry, power strokes, and the curtin–hammett
principle in brownian ratchets |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9650702/ https://www.ncbi.nlm.nih.gov/pubmed/36286995 http://dx.doi.org/10.1021/jacs.2c08723 |
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