Cargando…

Wochenende — modular and flexible alignment-based shotgun metagenome analysis

BACKGROUND: Shotgun metagenome analysis provides a robust and verifiable method for comprehensive microbiome analysis of fungal, viral, archaeal and bacterial taxonomy, particularly with regard to visualization of read mapping location, normalization options, growth dynamics and functional gene repe...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rosenboom, Ilona, Scheithauer, Tobias, Friedrich, Fabian C., Pörtner, Sophia, Hollstein, Lisa, Pust, Marie-Madlen, Sifakis, Konstantinos, Wehrbein, Tom, Rosenhahn, Bodo, Wiehlmann, Lutz, Chhatwal, Patrick, Tümmler, Burkhard, Davenport, Colin F.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2022
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9650795/ https://www.ncbi.nlm.nih.gov/pubmed/36368923 http://dx.doi.org/10.1186/s12864-022-08985-9

Ejemplares similares

Impact of Elexacaftor/Tezacaftor/Ivacaftor Therapy on the Cystic Fibrosis Airway Microbial Metagenome
por: Pallenberg, Sophia T., et al.
Publicado: (2022)

Identification of core and rare species in metagenome samples based on shotgun metagenomic sequencing, Fourier transforms and spectral comparisons
por: Pust, Marie-Madlen, et al.
Publicado: (2021)

Longitudinal development of the airway metagenome of preterm very low birth weight infants during the first two years of life
por: Rosenboom, Ilona, et al.
Publicado: (2023)

Direct RNA Nanopore Sequencing of Pseudomonas aeruginosa Clone C Transcriptomes
por: Pust, Marie-Madlen, et al.
Publicado: (2022)

The Cystic Fibrosis Upper and Lower Airway Metagenome
por: Pienkowska, Katarzyna, et al.
Publicado: (2023)

Filtration and Normalization of Sequencing Read Data in Whole-Metagenome Shotgun Samples
por: Chouvarine, Philippe, et al.
Publicado: (2016)

Bacterial low-abundant taxa are key determinants of a healthy airway metagenome in the early years of human life
por: Pust, Marie-Madlen, et al.
Publicado: (2021)

The human respiratory tract microbial community structures in healthy and cystic fibrosis infants
por: Pust, Marie-Madlen, et al.
Publicado: (2020)

CERN: Das Urknall-Experiment beginnt am Wochenende
Publicado: (2010)

Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads
por: Davenport, Colin F., et al.
Publicado: (2012)

Structural genome variants of Pseudomonas aeruginosa clone C and PA14 strains
por: Klockgether, Jens, et al.
Publicado: (2023)

The cystic fibrosis lower airways microbial metagenome
por: Moran Losada, Patricia, et al.
Publicado: (2016)

Pseudomonas aeruginosa Genomic Structure and Diversity
por: Klockgether, Jens, et al.
Publicado: (2011)

Advances in understanding Pseudomonas
por: Tümmler, Burkhard, et al.
Publicado: (2014)

PALADIN: protein alignment for functional profiling whole metagenome shotgun data
por: Westbrook, Anthony, et al.
Publicado: (2017)

An introduction to the analysis of shotgun metagenomic data
por: Sharpton, Thomas J.
Publicado: (2014)

Identification of fungi in shotgun metagenomics datasets
por: Donovan, Paul D., et al.
Publicado: (2018)

Pseudomonas aeruginosa population genomics among adults with bronchiectasis across Germany
por: Rosenboom, Ilona, et al.
Publicado: (2023)

Fitness of Isogenic Colony Morphology Variants of Pseudomonas aeruginosa in Murine Airway Infection
por: Rakhimova, Elza, et al.
Publicado: (2008)

Evaluating the Information Content of Shallow Shotgun Metagenomics
por: Hillmann, Benjamin, et al.
Publicado: (2018)

Advancing Genome-Resolved Metagenomics beyond the Shotgun
por: Malmstrom, Rex R., et al.
Publicado: (2019)

Shotgun Metagenomic Survey of Maize Soil Rhizobiome
por: Babalola, Olubukola Oluranti, et al.
Publicado: (2020)

Multicenter assessment of shotgun metagenomics for pathogen detection
por: Liu, Donglai, et al.
Publicado: (2021)

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis
por: Ferravante, Carlo, et al.
Publicado: (2021)

Molecular Epidemiology of Chronic Pseudomonas aeruginosa Airway Infections in Cystic Fibrosis
por: Cramer, Nina, et al.
Publicado: (2012)

Taxonomic classification of metagenomic shotgun sequences with CARMA3
por: Gerlach, Wolfgang, et al.
Publicado: (2011)

WGSQuikr: Fast Whole-Genome Shotgun Metagenomic Classification
por: Koslicki, David, et al.
Publicado: (2014)

OTU Analysis Using Metagenomic Shotgun Sequencing Data
por: Hao, Xiaolin, et al.
Publicado: (2012)

Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics
por: Jovel, Juan, et al.
Publicado: (2016)

Survey of Maize Rhizosphere Microbiome Using Shotgun Metagenomics
por: Babalola, Olubukola Oluranti, et al.
Publicado: (2021)

Sequence diversity of the Pseudomonas aeruginosa population in loci that undergo microevolution in cystic fibrosis airways
por: Fischer, Sebastian, et al.
Publicado: (2021)

Improving saliva shotgun metagenomics by chemical host DNA depletion
por: Marotz, Clarisse A., et al.
Publicado: (2018)

Comparative Analysis of Sample Extraction and Library Construction for Shotgun Metagenomics
por: Peng, Zonghui, et al.
Publicado: (2020)

Metagenomic Survey of Tomato Rhizosphere Microbiome Using the Shotgun Approach
por: Babalola, Olubukola Oluranti, et al.
Publicado: (2022)

Shotgun metagenomes from productive lakes in an urban region of Sweden
por: Rodríguez-Gijón, Alejandro, et al.
Publicado: (2023)

Abundant Oligonucleotides Common to Most Bacteria
por: Davenport, Colin F., et al.
Publicado: (2010)

Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads
por: Xia, Li C., et al.
Publicado: (2011)

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
por: Liu, Bo, et al.
Publicado: (2011)

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
por: Liu, Bo, et al.
Publicado: (2011)

Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing
por: Hasan, Nur A., et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_qot29n0jo72dj7q3mkjvfepphl