Cargando…
Genomic, biochemical and expressional properties reveal strong conservation of the CLCA2 gene in birds and mammals
Recent studies have revealed the dynamic and complex evolution of CLCA1 gene homologues in and between mammals and birds with a particularly high diversity in mammals. In contrast, CLCA2 has only been found as a single copy gene in mammals, to date. Furthermore, CLCA2 has only been investigated in f...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9651043/ https://www.ncbi.nlm.nih.gov/pubmed/36389428 http://dx.doi.org/10.7717/peerj.14202 |
_version_ | 1784828157395730432 |
---|---|
author | Bartenschlager, Florian Klymiuk, Nikolai Gruber, Achim D. Mundhenk, Lars |
author_facet | Bartenschlager, Florian Klymiuk, Nikolai Gruber, Achim D. Mundhenk, Lars |
author_sort | Bartenschlager, Florian |
collection | PubMed |
description | Recent studies have revealed the dynamic and complex evolution of CLCA1 gene homologues in and between mammals and birds with a particularly high diversity in mammals. In contrast, CLCA2 has only been found as a single copy gene in mammals, to date. Furthermore, CLCA2 has only been investigated in few mammalian species but not in birds. Here, we established core genomic, protein biochemical and expressional properties of CLCA2 in several bird species and compared them with mammalian CLCA2. Chicken, turkey, quail and ostrich CLCA2 were compared to their mammalian orthologues using in silico, biochemical and expressional analyses. CLCA2 was found highly conserved not only at the level of genomic and exon architecture but also in terms of the canonical CLCA2 protein domain organization. The putatively prototypical galline CLCA2 (gCLCA2) was cloned and immunoblotting as well as immunofluorescence analyses of heterologously expressed gCLCA2 revealed protein cleavage, glycosylation patterns and anchoring in the plasma membrane similar to those of most mammalian CLCA2 orthologues. Immunohistochemistry found highly conserved CLCA2 expression in epidermal keratinocytes in all birds and mammals investigated. Our results suggest a highly conserved and likely evolutionarily indispensable role of CLCA2 in keratinocyte function. Its high degree of conservation on the genomic, biochemical and expressional levels stands in contrast to the dynamic structural complexities and proposed functional diversifications between mammalian and avian CLCA1 homologues, insinuating a significant degree of negative selection of CLCA2 orthologues among birds and mammals. Finally, and again in contrast to CLCA1, the high conservation of CLCA2 makes it a strong candidate for studying basic properties of the functionally still widely unresolved CLCA gene family. |
format | Online Article Text |
id | pubmed-9651043 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96510432022-11-15 Genomic, biochemical and expressional properties reveal strong conservation of the CLCA2 gene in birds and mammals Bartenschlager, Florian Klymiuk, Nikolai Gruber, Achim D. Mundhenk, Lars PeerJ Biochemistry Recent studies have revealed the dynamic and complex evolution of CLCA1 gene homologues in and between mammals and birds with a particularly high diversity in mammals. In contrast, CLCA2 has only been found as a single copy gene in mammals, to date. Furthermore, CLCA2 has only been investigated in few mammalian species but not in birds. Here, we established core genomic, protein biochemical and expressional properties of CLCA2 in several bird species and compared them with mammalian CLCA2. Chicken, turkey, quail and ostrich CLCA2 were compared to their mammalian orthologues using in silico, biochemical and expressional analyses. CLCA2 was found highly conserved not only at the level of genomic and exon architecture but also in terms of the canonical CLCA2 protein domain organization. The putatively prototypical galline CLCA2 (gCLCA2) was cloned and immunoblotting as well as immunofluorescence analyses of heterologously expressed gCLCA2 revealed protein cleavage, glycosylation patterns and anchoring in the plasma membrane similar to those of most mammalian CLCA2 orthologues. Immunohistochemistry found highly conserved CLCA2 expression in epidermal keratinocytes in all birds and mammals investigated. Our results suggest a highly conserved and likely evolutionarily indispensable role of CLCA2 in keratinocyte function. Its high degree of conservation on the genomic, biochemical and expressional levels stands in contrast to the dynamic structural complexities and proposed functional diversifications between mammalian and avian CLCA1 homologues, insinuating a significant degree of negative selection of CLCA2 orthologues among birds and mammals. Finally, and again in contrast to CLCA1, the high conservation of CLCA2 makes it a strong candidate for studying basic properties of the functionally still widely unresolved CLCA gene family. PeerJ Inc. 2022-11-08 /pmc/articles/PMC9651043/ /pubmed/36389428 http://dx.doi.org/10.7717/peerj.14202 Text en ©2022 Bartenschlager et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Biochemistry Bartenschlager, Florian Klymiuk, Nikolai Gruber, Achim D. Mundhenk, Lars Genomic, biochemical and expressional properties reveal strong conservation of the CLCA2 gene in birds and mammals |
title | Genomic, biochemical and expressional properties reveal strong conservation of the CLCA2 gene in birds and mammals |
title_full | Genomic, biochemical and expressional properties reveal strong conservation of the CLCA2 gene in birds and mammals |
title_fullStr | Genomic, biochemical and expressional properties reveal strong conservation of the CLCA2 gene in birds and mammals |
title_full_unstemmed | Genomic, biochemical and expressional properties reveal strong conservation of the CLCA2 gene in birds and mammals |
title_short | Genomic, biochemical and expressional properties reveal strong conservation of the CLCA2 gene in birds and mammals |
title_sort | genomic, biochemical and expressional properties reveal strong conservation of the clca2 gene in birds and mammals |
topic | Biochemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9651043/ https://www.ncbi.nlm.nih.gov/pubmed/36389428 http://dx.doi.org/10.7717/peerj.14202 |
work_keys_str_mv | AT bartenschlagerflorian genomicbiochemicalandexpressionalpropertiesrevealstrongconservationoftheclca2geneinbirdsandmammals AT klymiuknikolai genomicbiochemicalandexpressionalpropertiesrevealstrongconservationoftheclca2geneinbirdsandmammals AT gruberachimd genomicbiochemicalandexpressionalpropertiesrevealstrongconservationoftheclca2geneinbirdsandmammals AT mundhenklars genomicbiochemicalandexpressionalpropertiesrevealstrongconservationoftheclca2geneinbirdsandmammals |