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A study on the diagnosis of the Helicobacter pylori coccoid form with artificial intelligence technology
BACKGROUND: Helicobacter pylori (H. pylori) is an important pathogenic microorganism that causes gastric cancer, peptic ulcers and dyspepsia, and infects more than half of the world’s population. Eradicating H. pylori is the most effective means to prevent and treat these diseases. H. pylori coccoid...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9651970/ https://www.ncbi.nlm.nih.gov/pubmed/36386698 http://dx.doi.org/10.3389/fmicb.2022.1008346 |
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author | Zhong, Zishao Wang, Xin Li, Jianmin Zhang, Beiping Yan, Lijuan Xu, Shuchang Chen, Guangxia Gao, Hengjun |
author_facet | Zhong, Zishao Wang, Xin Li, Jianmin Zhang, Beiping Yan, Lijuan Xu, Shuchang Chen, Guangxia Gao, Hengjun |
author_sort | Zhong, Zishao |
collection | PubMed |
description | BACKGROUND: Helicobacter pylori (H. pylori) is an important pathogenic microorganism that causes gastric cancer, peptic ulcers and dyspepsia, and infects more than half of the world’s population. Eradicating H. pylori is the most effective means to prevent and treat these diseases. H. pylori coccoid form (HPCF) causes refractory H. pylori infection and should be given more attention in infection management. However, manual HPCF recognition on slides is time-consuming and labor-intensive and depends on experienced pathologists; thus, HPCF diagnosis is rarely performed and often overlooked. Therefore, simple HPCF diagnostic methods need to be developed. MATERIALS AND METHODS: We manually labeled 4,547 images from anonymized paraffin-embedded samples in the China Center for H. pylori Molecular Medicine (CCHpMM, Shanghai), followed by training and optimizing the Faster R-CNN and YOLO v5 models to identify HPCF. Mean average precision (mAP) was applied to evaluate and select the model. The artificial intelligence (AI) model interpretation results were compared with those of the pathologists with senior, intermediate, and junior experience levels, using the mean absolute error (MAE) of the coccoid rate as an evaluation metric. RESULTS: For the HPCF detection task, the YOLO v5 model was superior to the Faster R-CNN model (0.688 vs. 0.568, mean average precision, mAP); the optimized YOLO v5 model had a better performance (0.803 mAP). The MAE of the optimized YOLO v5 model (3.25 MAE) was superior to that of junior pathologists (4.14 MAE, p < 0.05), no worse than intermediate pathologists (3.40 MAE, p > 0.05), and equivalent to a senior pathologist (3.07 MAE, p > 0.05). CONCLUSION: HPCF identification using AI has the advantage of high accuracy and efficiency with the potential to assist or replace pathologists in clinical practice for HPCF identification. |
format | Online Article Text |
id | pubmed-9651970 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96519702022-11-15 A study on the diagnosis of the Helicobacter pylori coccoid form with artificial intelligence technology Zhong, Zishao Wang, Xin Li, Jianmin Zhang, Beiping Yan, Lijuan Xu, Shuchang Chen, Guangxia Gao, Hengjun Front Microbiol Microbiology BACKGROUND: Helicobacter pylori (H. pylori) is an important pathogenic microorganism that causes gastric cancer, peptic ulcers and dyspepsia, and infects more than half of the world’s population. Eradicating H. pylori is the most effective means to prevent and treat these diseases. H. pylori coccoid form (HPCF) causes refractory H. pylori infection and should be given more attention in infection management. However, manual HPCF recognition on slides is time-consuming and labor-intensive and depends on experienced pathologists; thus, HPCF diagnosis is rarely performed and often overlooked. Therefore, simple HPCF diagnostic methods need to be developed. MATERIALS AND METHODS: We manually labeled 4,547 images from anonymized paraffin-embedded samples in the China Center for H. pylori Molecular Medicine (CCHpMM, Shanghai), followed by training and optimizing the Faster R-CNN and YOLO v5 models to identify HPCF. Mean average precision (mAP) was applied to evaluate and select the model. The artificial intelligence (AI) model interpretation results were compared with those of the pathologists with senior, intermediate, and junior experience levels, using the mean absolute error (MAE) of the coccoid rate as an evaluation metric. RESULTS: For the HPCF detection task, the YOLO v5 model was superior to the Faster R-CNN model (0.688 vs. 0.568, mean average precision, mAP); the optimized YOLO v5 model had a better performance (0.803 mAP). The MAE of the optimized YOLO v5 model (3.25 MAE) was superior to that of junior pathologists (4.14 MAE, p < 0.05), no worse than intermediate pathologists (3.40 MAE, p > 0.05), and equivalent to a senior pathologist (3.07 MAE, p > 0.05). CONCLUSION: HPCF identification using AI has the advantage of high accuracy and efficiency with the potential to assist or replace pathologists in clinical practice for HPCF identification. Frontiers Media S.A. 2022-10-28 /pmc/articles/PMC9651970/ /pubmed/36386698 http://dx.doi.org/10.3389/fmicb.2022.1008346 Text en Copyright © 2022 Zhong, Wang, Li, Zhang, Yan, Xu, Chen and Gao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Zhong, Zishao Wang, Xin Li, Jianmin Zhang, Beiping Yan, Lijuan Xu, Shuchang Chen, Guangxia Gao, Hengjun A study on the diagnosis of the Helicobacter pylori coccoid form with artificial intelligence technology |
title | A study on the diagnosis of the Helicobacter pylori coccoid form with artificial intelligence technology |
title_full | A study on the diagnosis of the Helicobacter pylori coccoid form with artificial intelligence technology |
title_fullStr | A study on the diagnosis of the Helicobacter pylori coccoid form with artificial intelligence technology |
title_full_unstemmed | A study on the diagnosis of the Helicobacter pylori coccoid form with artificial intelligence technology |
title_short | A study on the diagnosis of the Helicobacter pylori coccoid form with artificial intelligence technology |
title_sort | study on the diagnosis of the helicobacter pylori coccoid form with artificial intelligence technology |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9651970/ https://www.ncbi.nlm.nih.gov/pubmed/36386698 http://dx.doi.org/10.3389/fmicb.2022.1008346 |
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