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Modeling community standards for metadata as templates makes data FAIR

It is challenging to determine whether datasets are findable, accessible, interoperable, and reusable (FAIR) because the FAIR Guiding Principles refer to highly idiosyncratic criteria regarding the metadata used to annotate datasets. Specifically, the FAIR principles require metadata to be “rich” an...

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Autores principales: Musen, Mark A., O’Connor, Martin J., Schultes, Erik, Martínez-Romero, Marcos, Hardi, Josef, Graybeal, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9653497/
https://www.ncbi.nlm.nih.gov/pubmed/36371407
http://dx.doi.org/10.1038/s41597-022-01815-3
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author Musen, Mark A.
O’Connor, Martin J.
Schultes, Erik
Martínez-Romero, Marcos
Hardi, Josef
Graybeal, John
author_facet Musen, Mark A.
O’Connor, Martin J.
Schultes, Erik
Martínez-Romero, Marcos
Hardi, Josef
Graybeal, John
author_sort Musen, Mark A.
collection PubMed
description It is challenging to determine whether datasets are findable, accessible, interoperable, and reusable (FAIR) because the FAIR Guiding Principles refer to highly idiosyncratic criteria regarding the metadata used to annotate datasets. Specifically, the FAIR principles require metadata to be “rich” and to adhere to “domain-relevant” community standards. Scientific communities should be able to define their own machine-actionable templates for metadata that encode these “rich,” discipline-specific elements. We have explored this template-based approach in the context of two software systems. One system is the CEDAR Workbench, which investigators use to author new metadata. The other is the FAIRware Workbench, which evaluates the metadata of archived datasets for their adherence to community standards. Benefits accrue when templates for metadata become central elements in an ecosystem of tools to manage online datasets—both because the templates serve as a community reference for what constitutes FAIR data, and because they embody that perspective in a form that can be distributed among a variety of software applications to assist with data stewardship and data sharing.
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spelling pubmed-96534972022-11-15 Modeling community standards for metadata as templates makes data FAIR Musen, Mark A. O’Connor, Martin J. Schultes, Erik Martínez-Romero, Marcos Hardi, Josef Graybeal, John Sci Data Article It is challenging to determine whether datasets are findable, accessible, interoperable, and reusable (FAIR) because the FAIR Guiding Principles refer to highly idiosyncratic criteria regarding the metadata used to annotate datasets. Specifically, the FAIR principles require metadata to be “rich” and to adhere to “domain-relevant” community standards. Scientific communities should be able to define their own machine-actionable templates for metadata that encode these “rich,” discipline-specific elements. We have explored this template-based approach in the context of two software systems. One system is the CEDAR Workbench, which investigators use to author new metadata. The other is the FAIRware Workbench, which evaluates the metadata of archived datasets for their adherence to community standards. Benefits accrue when templates for metadata become central elements in an ecosystem of tools to manage online datasets—both because the templates serve as a community reference for what constitutes FAIR data, and because they embody that perspective in a form that can be distributed among a variety of software applications to assist with data stewardship and data sharing. Nature Publishing Group UK 2022-11-12 /pmc/articles/PMC9653497/ /pubmed/36371407 http://dx.doi.org/10.1038/s41597-022-01815-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Musen, Mark A.
O’Connor, Martin J.
Schultes, Erik
Martínez-Romero, Marcos
Hardi, Josef
Graybeal, John
Modeling community standards for metadata as templates makes data FAIR
title Modeling community standards for metadata as templates makes data FAIR
title_full Modeling community standards for metadata as templates makes data FAIR
title_fullStr Modeling community standards for metadata as templates makes data FAIR
title_full_unstemmed Modeling community standards for metadata as templates makes data FAIR
title_short Modeling community standards for metadata as templates makes data FAIR
title_sort modeling community standards for metadata as templates makes data fair
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9653497/
https://www.ncbi.nlm.nih.gov/pubmed/36371407
http://dx.doi.org/10.1038/s41597-022-01815-3
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