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Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma
Ferroptosis plays an important role in cancer. However, studies about ferroptosis-related lncRNAs (FRLs) in skin cutaneous melanoma (SKCM) are scarce. Moreover, the relationship between prognostic FRLs and tumor microenvironment (TME) in melanoma remains unclear. This study investigates the potentia...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9653531/ https://www.ncbi.nlm.nih.gov/pubmed/36371574 http://dx.doi.org/10.1007/s12672-022-00581-3 |
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author | Ping, Shuai Gong, Ruining Lei, Ke Qing, Gong Zhang, Guangheng Chen, Jianghai |
author_facet | Ping, Shuai Gong, Ruining Lei, Ke Qing, Gong Zhang, Guangheng Chen, Jianghai |
author_sort | Ping, Shuai |
collection | PubMed |
description | Ferroptosis plays an important role in cancer. However, studies about ferroptosis-related lncRNAs (FRLs) in skin cutaneous melanoma (SKCM) are scarce. Moreover, the relationship between prognostic FRLs and tumor microenvironment (TME) in melanoma remains unclear. This study investigates the potential prognostic value of FRLs and their association with TME in SKCM. The RNA-sequencing data of SKCM were downloaded from The Cancer Genome Atlas (TCGA) database. Melanoma patients were randomly divided into training and testing groups in a 1:1 ratio. A signature composed of 19 FRLs was developed by the least absolute shrinkage and selection operator (LASSO) regression analysis to divide patients into a low-risk group with a better prognosis and a high-risk group with a poor prognosis. Multivariate Cox regression analysis suggested that the risk score was an independent prognostic factor. The Area Under Curve (AUC) value of the risk score reached 0.768 in the training group and 0.770 in the testing group. Subsequent analysis proved that immune-related signaling pathways were significantly enriched in the low-risk group. The tumor immune cell infiltration analysis demonstrated that melanoma in the high-risk group tended to be immunologically “cold”. We identified a novel FRLs signature which could accurately predict the prognosis of patients with melanoma. |
format | Online Article Text |
id | pubmed-9653531 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-96535312022-11-15 Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma Ping, Shuai Gong, Ruining Lei, Ke Qing, Gong Zhang, Guangheng Chen, Jianghai Discov Oncol Research Ferroptosis plays an important role in cancer. However, studies about ferroptosis-related lncRNAs (FRLs) in skin cutaneous melanoma (SKCM) are scarce. Moreover, the relationship between prognostic FRLs and tumor microenvironment (TME) in melanoma remains unclear. This study investigates the potential prognostic value of FRLs and their association with TME in SKCM. The RNA-sequencing data of SKCM were downloaded from The Cancer Genome Atlas (TCGA) database. Melanoma patients were randomly divided into training and testing groups in a 1:1 ratio. A signature composed of 19 FRLs was developed by the least absolute shrinkage and selection operator (LASSO) regression analysis to divide patients into a low-risk group with a better prognosis and a high-risk group with a poor prognosis. Multivariate Cox regression analysis suggested that the risk score was an independent prognostic factor. The Area Under Curve (AUC) value of the risk score reached 0.768 in the training group and 0.770 in the testing group. Subsequent analysis proved that immune-related signaling pathways were significantly enriched in the low-risk group. The tumor immune cell infiltration analysis demonstrated that melanoma in the high-risk group tended to be immunologically “cold”. We identified a novel FRLs signature which could accurately predict the prognosis of patients with melanoma. Springer US 2022-11-12 /pmc/articles/PMC9653531/ /pubmed/36371574 http://dx.doi.org/10.1007/s12672-022-00581-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Ping, Shuai Gong, Ruining Lei, Ke Qing, Gong Zhang, Guangheng Chen, Jianghai Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma |
title | Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma |
title_full | Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma |
title_fullStr | Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma |
title_full_unstemmed | Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma |
title_short | Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma |
title_sort | development and validation of a ferroptosis-related lncrnas signature to predict prognosis and microenvironment for melanoma |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9653531/ https://www.ncbi.nlm.nih.gov/pubmed/36371574 http://dx.doi.org/10.1007/s12672-022-00581-3 |
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