Cargando…

The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2

A large number of SARS-CoV-2 mutations in a short period of time has driven scientific research related to vaccines, new drugs, and antibodies to combat the new variants of the virus. Herein, we present a web portal containing the structural information, the tridimensional coordinates, and the molec...

Descripción completa

Detalles Bibliográficos
Autores principales: Romeo, Isabella, Prandi, Ingrid Guarnetti, Giombini, Emanuela, Gruber, Cesare Ernesto Maria, Pietrucci, Daniele, Borocci, Stefano, Abid, Nabil, Fava, Anna, Beccari, Andrea R., Chillemi, Giovanni, Talarico, Carmine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9654198/
https://www.ncbi.nlm.nih.gov/pubmed/36361870
http://dx.doi.org/10.3390/ijms232113082
_version_ 1784828870467256320
author Romeo, Isabella
Prandi, Ingrid Guarnetti
Giombini, Emanuela
Gruber, Cesare Ernesto Maria
Pietrucci, Daniele
Borocci, Stefano
Abid, Nabil
Fava, Anna
Beccari, Andrea R.
Chillemi, Giovanni
Talarico, Carmine
author_facet Romeo, Isabella
Prandi, Ingrid Guarnetti
Giombini, Emanuela
Gruber, Cesare Ernesto Maria
Pietrucci, Daniele
Borocci, Stefano
Abid, Nabil
Fava, Anna
Beccari, Andrea R.
Chillemi, Giovanni
Talarico, Carmine
author_sort Romeo, Isabella
collection PubMed
description A large number of SARS-CoV-2 mutations in a short period of time has driven scientific research related to vaccines, new drugs, and antibodies to combat the new variants of the virus. Herein, we present a web portal containing the structural information, the tridimensional coordinates, and the molecular dynamics trajectories of the SARS-CoV-2 spike protein and its main variants. The Spike Mutants website can serve as a rapid online tool for investigating the impact of novel mutations on virus fitness. Taking into account the high variability of SARS-CoV-2, this application can help the scientific community when prioritizing molecules for experimental assays, thus, accelerating the identification of promising drug candidates for COVID-19 treatment. Below we describe the main features of the platform and illustrate the possible applications for speeding up the drug discovery process and hypothesize new effective strategies to overcome the recurrent mutations in SARS-CoV-2 genome.
format Online
Article
Text
id pubmed-9654198
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-96541982022-11-15 The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2 Romeo, Isabella Prandi, Ingrid Guarnetti Giombini, Emanuela Gruber, Cesare Ernesto Maria Pietrucci, Daniele Borocci, Stefano Abid, Nabil Fava, Anna Beccari, Andrea R. Chillemi, Giovanni Talarico, Carmine Int J Mol Sci Article A large number of SARS-CoV-2 mutations in a short period of time has driven scientific research related to vaccines, new drugs, and antibodies to combat the new variants of the virus. Herein, we present a web portal containing the structural information, the tridimensional coordinates, and the molecular dynamics trajectories of the SARS-CoV-2 spike protein and its main variants. The Spike Mutants website can serve as a rapid online tool for investigating the impact of novel mutations on virus fitness. Taking into account the high variability of SARS-CoV-2, this application can help the scientific community when prioritizing molecules for experimental assays, thus, accelerating the identification of promising drug candidates for COVID-19 treatment. Below we describe the main features of the platform and illustrate the possible applications for speeding up the drug discovery process and hypothesize new effective strategies to overcome the recurrent mutations in SARS-CoV-2 genome. MDPI 2022-10-28 /pmc/articles/PMC9654198/ /pubmed/36361870 http://dx.doi.org/10.3390/ijms232113082 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Romeo, Isabella
Prandi, Ingrid Guarnetti
Giombini, Emanuela
Gruber, Cesare Ernesto Maria
Pietrucci, Daniele
Borocci, Stefano
Abid, Nabil
Fava, Anna
Beccari, Andrea R.
Chillemi, Giovanni
Talarico, Carmine
The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2
title The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2
title_full The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2
title_fullStr The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2
title_full_unstemmed The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2
title_short The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2
title_sort spike mutants website: a worldwide used resource against sars-cov-2
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9654198/
https://www.ncbi.nlm.nih.gov/pubmed/36361870
http://dx.doi.org/10.3390/ijms232113082
work_keys_str_mv AT romeoisabella thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT prandiingridguarnetti thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT giombiniemanuela thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT grubercesareernestomaria thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT pietruccidaniele thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT boroccistefano thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT abidnabil thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT favaanna thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT beccariandrear thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT chillemigiovanni thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT talaricocarmine thespikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT romeoisabella spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT prandiingridguarnetti spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT giombiniemanuela spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT grubercesareernestomaria spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT pietruccidaniele spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT boroccistefano spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT abidnabil spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT favaanna spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT beccariandrear spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT chillemigiovanni spikemutantswebsiteaworldwideusedresourceagainstsarscov2
AT talaricocarmine spikemutantswebsiteaworldwideusedresourceagainstsarscov2