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New Method for Imputation of Unquantifiable Values Using Bayesian Statistics for a Mixture of Censored or Truncated Distributions: Application to Trace Elements Measured in Blood of Olive Ridley Sea Turtles from Mexico
SIMPLE SUMMARY: Analytical science in environmental research is frequently confronted with the problem of detection limits or missing data in the analyzed variables. This situation precludes the use of common methods of statistical analysis. We have developed a method to estimate the distribution of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9654247/ https://www.ncbi.nlm.nih.gov/pubmed/36359043 http://dx.doi.org/10.3390/ani12212919 |
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author | Salvat-Leal, Inmaculada Cortés-Gómez, Adriana A. Romero, Diego Girondot, Marc |
author_facet | Salvat-Leal, Inmaculada Cortés-Gómez, Adriana A. Romero, Diego Girondot, Marc |
author_sort | Salvat-Leal, Inmaculada |
collection | PubMed |
description | SIMPLE SUMMARY: Analytical science in environmental research is frequently confronted with the problem of detection limits or missing data in the analyzed variables. This situation precludes the use of common methods of statistical analysis. We have developed a method to estimate the distribution of samples below or above the detection limit and were able to estimate the statistical distribution of the missing data. We test this method using a dataset of 25 trace elements measured in dead and alive marine turtles. We confirm previous finding that Cd and Na are significantly associated with dead or alive status, and we show that strontium concentration is also linked to this status. ABSTRACT: One recurring difficulty in ecotoxicological studies is that a substantial portion of concentrations are below the limits of detection established by analytical laboratories. This results in censored distributions in which concentrations of some samples are only known to be below a threshold. The currently available methods have several limitations because they cannot be used with complex situations (e.g., different lower and upper limits in the same dataset, mixture of distributions, truncation and censoring in a single dataset). We propose a versatile method to fit the most diverse situations using conditional likelihood and Bayesian statistics. We test the method with a fictive dataset to ensure its correct description of a known situation. Then we apply the method to a dataset comprising 25 element concentrations analyzed in the blood of nesting marine turtles. We confirm previous findings using this dataset, and we also detect an unexpected new relationship between mortality and strontium concentration. |
format | Online Article Text |
id | pubmed-9654247 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96542472022-11-15 New Method for Imputation of Unquantifiable Values Using Bayesian Statistics for a Mixture of Censored or Truncated Distributions: Application to Trace Elements Measured in Blood of Olive Ridley Sea Turtles from Mexico Salvat-Leal, Inmaculada Cortés-Gómez, Adriana A. Romero, Diego Girondot, Marc Animals (Basel) Article SIMPLE SUMMARY: Analytical science in environmental research is frequently confronted with the problem of detection limits or missing data in the analyzed variables. This situation precludes the use of common methods of statistical analysis. We have developed a method to estimate the distribution of samples below or above the detection limit and were able to estimate the statistical distribution of the missing data. We test this method using a dataset of 25 trace elements measured in dead and alive marine turtles. We confirm previous finding that Cd and Na are significantly associated with dead or alive status, and we show that strontium concentration is also linked to this status. ABSTRACT: One recurring difficulty in ecotoxicological studies is that a substantial portion of concentrations are below the limits of detection established by analytical laboratories. This results in censored distributions in which concentrations of some samples are only known to be below a threshold. The currently available methods have several limitations because they cannot be used with complex situations (e.g., different lower and upper limits in the same dataset, mixture of distributions, truncation and censoring in a single dataset). We propose a versatile method to fit the most diverse situations using conditional likelihood and Bayesian statistics. We test the method with a fictive dataset to ensure its correct description of a known situation. Then we apply the method to a dataset comprising 25 element concentrations analyzed in the blood of nesting marine turtles. We confirm previous findings using this dataset, and we also detect an unexpected new relationship between mortality and strontium concentration. MDPI 2022-10-25 /pmc/articles/PMC9654247/ /pubmed/36359043 http://dx.doi.org/10.3390/ani12212919 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Salvat-Leal, Inmaculada Cortés-Gómez, Adriana A. Romero, Diego Girondot, Marc New Method for Imputation of Unquantifiable Values Using Bayesian Statistics for a Mixture of Censored or Truncated Distributions: Application to Trace Elements Measured in Blood of Olive Ridley Sea Turtles from Mexico |
title | New Method for Imputation of Unquantifiable Values Using Bayesian Statistics for a Mixture of Censored or Truncated Distributions: Application to Trace Elements Measured in Blood of Olive Ridley Sea Turtles from Mexico |
title_full | New Method for Imputation of Unquantifiable Values Using Bayesian Statistics for a Mixture of Censored or Truncated Distributions: Application to Trace Elements Measured in Blood of Olive Ridley Sea Turtles from Mexico |
title_fullStr | New Method for Imputation of Unquantifiable Values Using Bayesian Statistics for a Mixture of Censored or Truncated Distributions: Application to Trace Elements Measured in Blood of Olive Ridley Sea Turtles from Mexico |
title_full_unstemmed | New Method for Imputation of Unquantifiable Values Using Bayesian Statistics for a Mixture of Censored or Truncated Distributions: Application to Trace Elements Measured in Blood of Olive Ridley Sea Turtles from Mexico |
title_short | New Method for Imputation of Unquantifiable Values Using Bayesian Statistics for a Mixture of Censored or Truncated Distributions: Application to Trace Elements Measured in Blood of Olive Ridley Sea Turtles from Mexico |
title_sort | new method for imputation of unquantifiable values using bayesian statistics for a mixture of censored or truncated distributions: application to trace elements measured in blood of olive ridley sea turtles from mexico |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9654247/ https://www.ncbi.nlm.nih.gov/pubmed/36359043 http://dx.doi.org/10.3390/ani12212919 |
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