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Preliminary Expression Analysis of the OSCA Gene Family in Maize and Their Involvement in Temperature Stress
Hyperosmolality-gated calcium-permeable channels (OSCA) are characterized as an osmosensor in plants; they are able to recognize and respond to exogenous and endogenous osmotic changes, and play a vital role in plant growth and adaptability to environmental stress. To explore the potential biologica...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656168/ https://www.ncbi.nlm.nih.gov/pubmed/36362446 http://dx.doi.org/10.3390/ijms232113658 |
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author | Li, Yuanyang Zhang, Yubin Li, Bin Hou, Liyuan Yu, Jianing Jia, Chengguo Wang, Zhe Chen, Siqi Zhang, Mingzhe Qin, Jianchun Cao, Ning Cui, Jinhu Shi, Wuliang |
author_facet | Li, Yuanyang Zhang, Yubin Li, Bin Hou, Liyuan Yu, Jianing Jia, Chengguo Wang, Zhe Chen, Siqi Zhang, Mingzhe Qin, Jianchun Cao, Ning Cui, Jinhu Shi, Wuliang |
author_sort | Li, Yuanyang |
collection | PubMed |
description | Hyperosmolality-gated calcium-permeable channels (OSCA) are characterized as an osmosensor in plants; they are able to recognize and respond to exogenous and endogenous osmotic changes, and play a vital role in plant growth and adaptability to environmental stress. To explore the potential biological functions of OSCAs in maize, we performed a bioinformatics and expression analysis of the ZmOSCA gene family. Using bioinformatics methods, we identified twelve OSCA genes from the genome database of maize. According to their sequence composition and phylogenetic relationship, the maize OSCA family was classified into four groups (Ⅰ, Ⅱ, Ⅲ, and Ⅳ). Multiple sequence alignment analysis revealed a conserved DUF221 domain in these members. We modeled the calcium binding sites of four OSCA families using the autodocking technique. The expression profiles of ZmOSCA genes were analyzed in different tissues and under diverse abiotic stresses such as drought, salt, high temperature, and chilling using quantitative real-time PCR (qRT-PCR). We found that the expression of twelve ZmOSCA genes is variant in different tissues of maize. Furthermore, abiotic stresses such as drought, salt, high temperature, and chilling differentially induced the expression of twelve ZmOSCA genes. We chose ZmOSCA2.2 and ZmOSCA2.3, which responded most strongly to temperature stress, for prediction of protein interactions. We modeled the calcium binding sites of four OSCA families using autodocking tools, obtaining a number of new results. These results are helpful in understanding the function of the plant OSCA gene family for study of the molecular mechanism of plant osmotic stress and response, as well as exploration of the interaction between osmotic stress, high-temperature stress, and low-temperature stress signal transduction mechanisms. As such, they can provide a theoretical basis for crop breeding. |
format | Online Article Text |
id | pubmed-9656168 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96561682022-11-15 Preliminary Expression Analysis of the OSCA Gene Family in Maize and Their Involvement in Temperature Stress Li, Yuanyang Zhang, Yubin Li, Bin Hou, Liyuan Yu, Jianing Jia, Chengguo Wang, Zhe Chen, Siqi Zhang, Mingzhe Qin, Jianchun Cao, Ning Cui, Jinhu Shi, Wuliang Int J Mol Sci Article Hyperosmolality-gated calcium-permeable channels (OSCA) are characterized as an osmosensor in plants; they are able to recognize and respond to exogenous and endogenous osmotic changes, and play a vital role in plant growth and adaptability to environmental stress. To explore the potential biological functions of OSCAs in maize, we performed a bioinformatics and expression analysis of the ZmOSCA gene family. Using bioinformatics methods, we identified twelve OSCA genes from the genome database of maize. According to their sequence composition and phylogenetic relationship, the maize OSCA family was classified into four groups (Ⅰ, Ⅱ, Ⅲ, and Ⅳ). Multiple sequence alignment analysis revealed a conserved DUF221 domain in these members. We modeled the calcium binding sites of four OSCA families using the autodocking technique. The expression profiles of ZmOSCA genes were analyzed in different tissues and under diverse abiotic stresses such as drought, salt, high temperature, and chilling using quantitative real-time PCR (qRT-PCR). We found that the expression of twelve ZmOSCA genes is variant in different tissues of maize. Furthermore, abiotic stresses such as drought, salt, high temperature, and chilling differentially induced the expression of twelve ZmOSCA genes. We chose ZmOSCA2.2 and ZmOSCA2.3, which responded most strongly to temperature stress, for prediction of protein interactions. We modeled the calcium binding sites of four OSCA families using autodocking tools, obtaining a number of new results. These results are helpful in understanding the function of the plant OSCA gene family for study of the molecular mechanism of plant osmotic stress and response, as well as exploration of the interaction between osmotic stress, high-temperature stress, and low-temperature stress signal transduction mechanisms. As such, they can provide a theoretical basis for crop breeding. MDPI 2022-11-07 /pmc/articles/PMC9656168/ /pubmed/36362446 http://dx.doi.org/10.3390/ijms232113658 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Li, Yuanyang Zhang, Yubin Li, Bin Hou, Liyuan Yu, Jianing Jia, Chengguo Wang, Zhe Chen, Siqi Zhang, Mingzhe Qin, Jianchun Cao, Ning Cui, Jinhu Shi, Wuliang Preliminary Expression Analysis of the OSCA Gene Family in Maize and Their Involvement in Temperature Stress |
title | Preliminary Expression Analysis of the OSCA Gene Family in Maize and Their Involvement in Temperature Stress |
title_full | Preliminary Expression Analysis of the OSCA Gene Family in Maize and Their Involvement in Temperature Stress |
title_fullStr | Preliminary Expression Analysis of the OSCA Gene Family in Maize and Their Involvement in Temperature Stress |
title_full_unstemmed | Preliminary Expression Analysis of the OSCA Gene Family in Maize and Their Involvement in Temperature Stress |
title_short | Preliminary Expression Analysis of the OSCA Gene Family in Maize and Their Involvement in Temperature Stress |
title_sort | preliminary expression analysis of the osca gene family in maize and their involvement in temperature stress |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656168/ https://www.ncbi.nlm.nih.gov/pubmed/36362446 http://dx.doi.org/10.3390/ijms232113658 |
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