Cargando…

A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning

The segmentation of pulmonary lobes is important in clinical assessment, lesion location, and surgical planning. Automatic lobe segmentation is challenging, mainly due to the incomplete fissures or the morphological variation resulting from lung disease. In this work, we propose a learning-based app...

Descripción completa

Detalles Bibliográficos
Autores principales: Xue, Mengfan, Han, Lu, Song, Yiran, Rao, Fan, Peng, Dongliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656539/
https://www.ncbi.nlm.nih.gov/pubmed/36366258
http://dx.doi.org/10.3390/s22218560
_version_ 1784829460622606336
author Xue, Mengfan
Han, Lu
Song, Yiran
Rao, Fan
Peng, Dongliang
author_facet Xue, Mengfan
Han, Lu
Song, Yiran
Rao, Fan
Peng, Dongliang
author_sort Xue, Mengfan
collection PubMed
description The segmentation of pulmonary lobes is important in clinical assessment, lesion location, and surgical planning. Automatic lobe segmentation is challenging, mainly due to the incomplete fissures or the morphological variation resulting from lung disease. In this work, we propose a learning-based approach that incorporates information from the local fissures, the whole lung, and priori pulmonary anatomy knowledge to separate the lobes robustly and accurately. The prior pulmonary atlas is registered to the test CT images with the aid of the detected fissures. The result of the lobe segmentation is obtained by mapping the deformation function on the lobes-annotated atlas. The proposed method is evaluated in a custom dataset with COPD. Twenty-four CT scans randomly selected from the custom dataset were segmented manually and are available to the public. The experiments showed that the average dice coefficients were 0.95, 0.90, 0.97, 0.97, and 0.97, respectively, for the right upper, right middle, right lower, left upper, and left lower lobes. Moreover, the comparison of the performance with a former learning-based segmentation approach suggests that the presented method could achieve comparable segmentation accuracy and behave more robustly in cases with morphological specificity.
format Online
Article
Text
id pubmed-9656539
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-96565392022-11-15 A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning Xue, Mengfan Han, Lu Song, Yiran Rao, Fan Peng, Dongliang Sensors (Basel) Article The segmentation of pulmonary lobes is important in clinical assessment, lesion location, and surgical planning. Automatic lobe segmentation is challenging, mainly due to the incomplete fissures or the morphological variation resulting from lung disease. In this work, we propose a learning-based approach that incorporates information from the local fissures, the whole lung, and priori pulmonary anatomy knowledge to separate the lobes robustly and accurately. The prior pulmonary atlas is registered to the test CT images with the aid of the detected fissures. The result of the lobe segmentation is obtained by mapping the deformation function on the lobes-annotated atlas. The proposed method is evaluated in a custom dataset with COPD. Twenty-four CT scans randomly selected from the custom dataset were segmented manually and are available to the public. The experiments showed that the average dice coefficients were 0.95, 0.90, 0.97, 0.97, and 0.97, respectively, for the right upper, right middle, right lower, left upper, and left lower lobes. Moreover, the comparison of the performance with a former learning-based segmentation approach suggests that the presented method could achieve comparable segmentation accuracy and behave more robustly in cases with morphological specificity. MDPI 2022-11-07 /pmc/articles/PMC9656539/ /pubmed/36366258 http://dx.doi.org/10.3390/s22218560 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Xue, Mengfan
Han, Lu
Song, Yiran
Rao, Fan
Peng, Dongliang
A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning
title A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning
title_full A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning
title_fullStr A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning
title_full_unstemmed A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning
title_short A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning
title_sort fissure-aided registration approach for automatic pulmonary lobe segmentation using deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656539/
https://www.ncbi.nlm.nih.gov/pubmed/36366258
http://dx.doi.org/10.3390/s22218560
work_keys_str_mv AT xuemengfan afissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning
AT hanlu afissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning
AT songyiran afissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning
AT raofan afissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning
AT pengdongliang afissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning
AT xuemengfan fissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning
AT hanlu fissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning
AT songyiran fissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning
AT raofan fissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning
AT pengdongliang fissureaidedregistrationapproachforautomaticpulmonarylobesegmentationusingdeeplearning