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A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning
The segmentation of pulmonary lobes is important in clinical assessment, lesion location, and surgical planning. Automatic lobe segmentation is challenging, mainly due to the incomplete fissures or the morphological variation resulting from lung disease. In this work, we propose a learning-based app...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656539/ https://www.ncbi.nlm.nih.gov/pubmed/36366258 http://dx.doi.org/10.3390/s22218560 |
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author | Xue, Mengfan Han, Lu Song, Yiran Rao, Fan Peng, Dongliang |
author_facet | Xue, Mengfan Han, Lu Song, Yiran Rao, Fan Peng, Dongliang |
author_sort | Xue, Mengfan |
collection | PubMed |
description | The segmentation of pulmonary lobes is important in clinical assessment, lesion location, and surgical planning. Automatic lobe segmentation is challenging, mainly due to the incomplete fissures or the morphological variation resulting from lung disease. In this work, we propose a learning-based approach that incorporates information from the local fissures, the whole lung, and priori pulmonary anatomy knowledge to separate the lobes robustly and accurately. The prior pulmonary atlas is registered to the test CT images with the aid of the detected fissures. The result of the lobe segmentation is obtained by mapping the deformation function on the lobes-annotated atlas. The proposed method is evaluated in a custom dataset with COPD. Twenty-four CT scans randomly selected from the custom dataset were segmented manually and are available to the public. The experiments showed that the average dice coefficients were 0.95, 0.90, 0.97, 0.97, and 0.97, respectively, for the right upper, right middle, right lower, left upper, and left lower lobes. Moreover, the comparison of the performance with a former learning-based segmentation approach suggests that the presented method could achieve comparable segmentation accuracy and behave more robustly in cases with morphological specificity. |
format | Online Article Text |
id | pubmed-9656539 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96565392022-11-15 A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning Xue, Mengfan Han, Lu Song, Yiran Rao, Fan Peng, Dongliang Sensors (Basel) Article The segmentation of pulmonary lobes is important in clinical assessment, lesion location, and surgical planning. Automatic lobe segmentation is challenging, mainly due to the incomplete fissures or the morphological variation resulting from lung disease. In this work, we propose a learning-based approach that incorporates information from the local fissures, the whole lung, and priori pulmonary anatomy knowledge to separate the lobes robustly and accurately. The prior pulmonary atlas is registered to the test CT images with the aid of the detected fissures. The result of the lobe segmentation is obtained by mapping the deformation function on the lobes-annotated atlas. The proposed method is evaluated in a custom dataset with COPD. Twenty-four CT scans randomly selected from the custom dataset were segmented manually and are available to the public. The experiments showed that the average dice coefficients were 0.95, 0.90, 0.97, 0.97, and 0.97, respectively, for the right upper, right middle, right lower, left upper, and left lower lobes. Moreover, the comparison of the performance with a former learning-based segmentation approach suggests that the presented method could achieve comparable segmentation accuracy and behave more robustly in cases with morphological specificity. MDPI 2022-11-07 /pmc/articles/PMC9656539/ /pubmed/36366258 http://dx.doi.org/10.3390/s22218560 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Xue, Mengfan Han, Lu Song, Yiran Rao, Fan Peng, Dongliang A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning |
title | A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning |
title_full | A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning |
title_fullStr | A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning |
title_full_unstemmed | A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning |
title_short | A Fissure-Aided Registration Approach for Automatic Pulmonary Lobe Segmentation Using Deep Learning |
title_sort | fissure-aided registration approach for automatic pulmonary lobe segmentation using deep learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9656539/ https://www.ncbi.nlm.nih.gov/pubmed/36366258 http://dx.doi.org/10.3390/s22218560 |
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