Cargando…

Weak Noncovalent Interactions in Three Closely Related Adamantane-Linked 1,2,4-Triazole N-Mannich Bases: Insights from Energy Frameworks, Hirshfeld Surface Analysis, In Silico 11β-HSD1 Molecular Docking and ADMET Prediction

Structural analysis and docking studies of three adamantane-linked 1,2,4-triazole N-Mannich bases (1–3) are presented. Compounds 1, 2 and 3 crystallized in the monoclinic P2(1)/c, P2(1) and P2(1)/n space groups, respectively. Crystal packing of 1 was stabilized by intermolecular C-H⋯O interactions,...

Descripción completa

Detalles Bibliográficos
Autores principales: Al-Wahaibi, Lamya H., Macías, Mario A., Blacque, Olivier, Zondagh, Luke S., Joubert, Jacques, Thamotharan, Subbiah, Percino, María Judith, Mohamed, Ahmed A. B., El-Emam, Ali A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9658560/
https://www.ncbi.nlm.nih.gov/pubmed/36364230
http://dx.doi.org/10.3390/molecules27217403
_version_ 1784829981496442880
author Al-Wahaibi, Lamya H.
Macías, Mario A.
Blacque, Olivier
Zondagh, Luke S.
Joubert, Jacques
Thamotharan, Subbiah
Percino, María Judith
Mohamed, Ahmed A. B.
El-Emam, Ali A.
author_facet Al-Wahaibi, Lamya H.
Macías, Mario A.
Blacque, Olivier
Zondagh, Luke S.
Joubert, Jacques
Thamotharan, Subbiah
Percino, María Judith
Mohamed, Ahmed A. B.
El-Emam, Ali A.
author_sort Al-Wahaibi, Lamya H.
collection PubMed
description Structural analysis and docking studies of three adamantane-linked 1,2,4-triazole N-Mannich bases (1–3) are presented. Compounds 1, 2 and 3 crystallized in the monoclinic P2(1)/c, P2(1) and P2(1)/n space groups, respectively. Crystal packing of 1 was stabilized by intermolecular C-H⋯O interactions, whereas compounds 2 and 3 were stabilized through intermolecular C-H⋯N, C-H⋯S and C-H⋯π interactions. The energy frameworks for crystal structures of 1–3 were described. The substituent effect on the intermolecular interactions and their contributions were described on the basis of Hirshfeld surface analyses. The 11β-hydroxysteroid dehydrogenase type 1 (11β-HSD1) inhibition potential, pharmacokinetic and toxicity profiles of compounds 1–3 were determined using in silico techniques. Molecular docking of the compounds into the 11β-HSD1 active site showed comparable binding affinity scores (−7.50 to −8.92 kcal/mol) to the 11β-HSD1 co-crystallized ligand 4YQ (−8.48 kcal/mol, 11β-HSD1 IC(50) = 9.9 nM). The compounds interacted with key active site residues, namely Ser170 and Tyr183, via strong hydrogen bond interactions. The predicted pharmacokinetic and toxicity profiles of the compounds were assessed, and were found to exhibit excellent ADMET potential.
format Online
Article
Text
id pubmed-9658560
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-96585602022-11-15 Weak Noncovalent Interactions in Three Closely Related Adamantane-Linked 1,2,4-Triazole N-Mannich Bases: Insights from Energy Frameworks, Hirshfeld Surface Analysis, In Silico 11β-HSD1 Molecular Docking and ADMET Prediction Al-Wahaibi, Lamya H. Macías, Mario A. Blacque, Olivier Zondagh, Luke S. Joubert, Jacques Thamotharan, Subbiah Percino, María Judith Mohamed, Ahmed A. B. El-Emam, Ali A. Molecules Article Structural analysis and docking studies of three adamantane-linked 1,2,4-triazole N-Mannich bases (1–3) are presented. Compounds 1, 2 and 3 crystallized in the monoclinic P2(1)/c, P2(1) and P2(1)/n space groups, respectively. Crystal packing of 1 was stabilized by intermolecular C-H⋯O interactions, whereas compounds 2 and 3 were stabilized through intermolecular C-H⋯N, C-H⋯S and C-H⋯π interactions. The energy frameworks for crystal structures of 1–3 were described. The substituent effect on the intermolecular interactions and their contributions were described on the basis of Hirshfeld surface analyses. The 11β-hydroxysteroid dehydrogenase type 1 (11β-HSD1) inhibition potential, pharmacokinetic and toxicity profiles of compounds 1–3 were determined using in silico techniques. Molecular docking of the compounds into the 11β-HSD1 active site showed comparable binding affinity scores (−7.50 to −8.92 kcal/mol) to the 11β-HSD1 co-crystallized ligand 4YQ (−8.48 kcal/mol, 11β-HSD1 IC(50) = 9.9 nM). The compounds interacted with key active site residues, namely Ser170 and Tyr183, via strong hydrogen bond interactions. The predicted pharmacokinetic and toxicity profiles of the compounds were assessed, and were found to exhibit excellent ADMET potential. MDPI 2022-10-31 /pmc/articles/PMC9658560/ /pubmed/36364230 http://dx.doi.org/10.3390/molecules27217403 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Al-Wahaibi, Lamya H.
Macías, Mario A.
Blacque, Olivier
Zondagh, Luke S.
Joubert, Jacques
Thamotharan, Subbiah
Percino, María Judith
Mohamed, Ahmed A. B.
El-Emam, Ali A.
Weak Noncovalent Interactions in Three Closely Related Adamantane-Linked 1,2,4-Triazole N-Mannich Bases: Insights from Energy Frameworks, Hirshfeld Surface Analysis, In Silico 11β-HSD1 Molecular Docking and ADMET Prediction
title Weak Noncovalent Interactions in Three Closely Related Adamantane-Linked 1,2,4-Triazole N-Mannich Bases: Insights from Energy Frameworks, Hirshfeld Surface Analysis, In Silico 11β-HSD1 Molecular Docking and ADMET Prediction
title_full Weak Noncovalent Interactions in Three Closely Related Adamantane-Linked 1,2,4-Triazole N-Mannich Bases: Insights from Energy Frameworks, Hirshfeld Surface Analysis, In Silico 11β-HSD1 Molecular Docking and ADMET Prediction
title_fullStr Weak Noncovalent Interactions in Three Closely Related Adamantane-Linked 1,2,4-Triazole N-Mannich Bases: Insights from Energy Frameworks, Hirshfeld Surface Analysis, In Silico 11β-HSD1 Molecular Docking and ADMET Prediction
title_full_unstemmed Weak Noncovalent Interactions in Three Closely Related Adamantane-Linked 1,2,4-Triazole N-Mannich Bases: Insights from Energy Frameworks, Hirshfeld Surface Analysis, In Silico 11β-HSD1 Molecular Docking and ADMET Prediction
title_short Weak Noncovalent Interactions in Three Closely Related Adamantane-Linked 1,2,4-Triazole N-Mannich Bases: Insights from Energy Frameworks, Hirshfeld Surface Analysis, In Silico 11β-HSD1 Molecular Docking and ADMET Prediction
title_sort weak noncovalent interactions in three closely related adamantane-linked 1,2,4-triazole n-mannich bases: insights from energy frameworks, hirshfeld surface analysis, in silico 11β-hsd1 molecular docking and admet prediction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9658560/
https://www.ncbi.nlm.nih.gov/pubmed/36364230
http://dx.doi.org/10.3390/molecules27217403
work_keys_str_mv AT alwahaibilamyah weaknoncovalentinteractionsinthreecloselyrelatedadamantanelinked124triazolenmannichbasesinsightsfromenergyframeworkshirshfeldsurfaceanalysisinsilico11bhsd1moleculardockingandadmetprediction
AT maciasmarioa weaknoncovalentinteractionsinthreecloselyrelatedadamantanelinked124triazolenmannichbasesinsightsfromenergyframeworkshirshfeldsurfaceanalysisinsilico11bhsd1moleculardockingandadmetprediction
AT blacqueolivier weaknoncovalentinteractionsinthreecloselyrelatedadamantanelinked124triazolenmannichbasesinsightsfromenergyframeworkshirshfeldsurfaceanalysisinsilico11bhsd1moleculardockingandadmetprediction
AT zondaghlukes weaknoncovalentinteractionsinthreecloselyrelatedadamantanelinked124triazolenmannichbasesinsightsfromenergyframeworkshirshfeldsurfaceanalysisinsilico11bhsd1moleculardockingandadmetprediction
AT joubertjacques weaknoncovalentinteractionsinthreecloselyrelatedadamantanelinked124triazolenmannichbasesinsightsfromenergyframeworkshirshfeldsurfaceanalysisinsilico11bhsd1moleculardockingandadmetprediction
AT thamotharansubbiah weaknoncovalentinteractionsinthreecloselyrelatedadamantanelinked124triazolenmannichbasesinsightsfromenergyframeworkshirshfeldsurfaceanalysisinsilico11bhsd1moleculardockingandadmetprediction
AT percinomariajudith weaknoncovalentinteractionsinthreecloselyrelatedadamantanelinked124triazolenmannichbasesinsightsfromenergyframeworkshirshfeldsurfaceanalysisinsilico11bhsd1moleculardockingandadmetprediction
AT mohamedahmedab weaknoncovalentinteractionsinthreecloselyrelatedadamantanelinked124triazolenmannichbasesinsightsfromenergyframeworkshirshfeldsurfaceanalysisinsilico11bhsd1moleculardockingandadmetprediction
AT elemamalia weaknoncovalentinteractionsinthreecloselyrelatedadamantanelinked124triazolenmannichbasesinsightsfromenergyframeworkshirshfeldsurfaceanalysisinsilico11bhsd1moleculardockingandadmetprediction