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Identification, Classification and Characterization of LBD Transcription Factor Family Genes in Pinus massoniana
Transcription factors (TFs) are a class of proteins that play an important regulatory role in controlling the expression of plant target genes by interacting with downstream regulatory genes. The lateral organ boundary (LOB) structural domain (LBD) genes are a family of genes encoding plant-specific...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9658656/ https://www.ncbi.nlm.nih.gov/pubmed/36362005 http://dx.doi.org/10.3390/ijms232113215 |
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author | Zhang, Chi Zhu, Peihuang Zhang, Mengyang Huang, Zichen Hippolyte, Agassin Romaric Hou, Yangqing Lou, Xuan Ji, Kongshu |
author_facet | Zhang, Chi Zhu, Peihuang Zhang, Mengyang Huang, Zichen Hippolyte, Agassin Romaric Hou, Yangqing Lou, Xuan Ji, Kongshu |
author_sort | Zhang, Chi |
collection | PubMed |
description | Transcription factors (TFs) are a class of proteins that play an important regulatory role in controlling the expression of plant target genes by interacting with downstream regulatory genes. The lateral organ boundary (LOB) structural domain (LBD) genes are a family of genes encoding plant-specific transcription factors that play important roles in regulating plant growth and development, nutrient metabolism, and environmental stresses. However, the LBD gene family has not been systematically identified in Pinus massoniana, one of the most important conifers in southern China. Therefore, in this study, we combined cell biology and bioinformatics approaches to identify the LBD gene family of P. massoniana by systematic gene structure and functional evolutionary analysis. We obtained 47 LBD gene family members, and all PmLBD members can be divided into two subfamilies, (Class I and Class II). By treating the plants with abiotic stress and growth hormone, etc., under qPCR-based analysis, we found that the expression of PmLBD genes was regulated by growth hormone and abiotic stress treatments, and thus this gene family in growth and development may be actively involved in plant growth and development and responses to adversity stress, etc. By subcellular localization analysis, PmLBD is a nuclear protein, and two of the genes, PmLBD44 and PmLBD45, were selected for functional characterization; secondly, yeast self-activation analysis showed that PmLBD44, PmLBD45, PmLBD46 and PmLBD47 had no self-activating activity. This study lays the foundation for an in-depth study of the role of the LBD gene family in other physiological activities of P. massoniana. |
format | Online Article Text |
id | pubmed-9658656 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96586562022-11-15 Identification, Classification and Characterization of LBD Transcription Factor Family Genes in Pinus massoniana Zhang, Chi Zhu, Peihuang Zhang, Mengyang Huang, Zichen Hippolyte, Agassin Romaric Hou, Yangqing Lou, Xuan Ji, Kongshu Int J Mol Sci Article Transcription factors (TFs) are a class of proteins that play an important regulatory role in controlling the expression of plant target genes by interacting with downstream regulatory genes. The lateral organ boundary (LOB) structural domain (LBD) genes are a family of genes encoding plant-specific transcription factors that play important roles in regulating plant growth and development, nutrient metabolism, and environmental stresses. However, the LBD gene family has not been systematically identified in Pinus massoniana, one of the most important conifers in southern China. Therefore, in this study, we combined cell biology and bioinformatics approaches to identify the LBD gene family of P. massoniana by systematic gene structure and functional evolutionary analysis. We obtained 47 LBD gene family members, and all PmLBD members can be divided into two subfamilies, (Class I and Class II). By treating the plants with abiotic stress and growth hormone, etc., under qPCR-based analysis, we found that the expression of PmLBD genes was regulated by growth hormone and abiotic stress treatments, and thus this gene family in growth and development may be actively involved in plant growth and development and responses to adversity stress, etc. By subcellular localization analysis, PmLBD is a nuclear protein, and two of the genes, PmLBD44 and PmLBD45, were selected for functional characterization; secondly, yeast self-activation analysis showed that PmLBD44, PmLBD45, PmLBD46 and PmLBD47 had no self-activating activity. This study lays the foundation for an in-depth study of the role of the LBD gene family in other physiological activities of P. massoniana. MDPI 2022-10-30 /pmc/articles/PMC9658656/ /pubmed/36362005 http://dx.doi.org/10.3390/ijms232113215 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhang, Chi Zhu, Peihuang Zhang, Mengyang Huang, Zichen Hippolyte, Agassin Romaric Hou, Yangqing Lou, Xuan Ji, Kongshu Identification, Classification and Characterization of LBD Transcription Factor Family Genes in Pinus massoniana |
title | Identification, Classification and Characterization of LBD Transcription Factor Family Genes in Pinus massoniana |
title_full | Identification, Classification and Characterization of LBD Transcription Factor Family Genes in Pinus massoniana |
title_fullStr | Identification, Classification and Characterization of LBD Transcription Factor Family Genes in Pinus massoniana |
title_full_unstemmed | Identification, Classification and Characterization of LBD Transcription Factor Family Genes in Pinus massoniana |
title_short | Identification, Classification and Characterization of LBD Transcription Factor Family Genes in Pinus massoniana |
title_sort | identification, classification and characterization of lbd transcription factor family genes in pinus massoniana |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9658656/ https://www.ncbi.nlm.nih.gov/pubmed/36362005 http://dx.doi.org/10.3390/ijms232113215 |
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