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A Theoretical Study of the C–X Bond Cleavage Mediated by Cob(II)Aloxime
The C–X bond cleavage in different methyl halides (CH(3)X; X = Cl, Br, I) mediated by 5,6-dimethylbenzimidazole-bis(dimethylglyoximate)cobalt(II) (Co(II)Cbx) was theoretically investigated in the present work. An S(N)2-like mechanism was considered to simulate the chemical process where the cobalt a...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9658964/ https://www.ncbi.nlm.nih.gov/pubmed/36364105 http://dx.doi.org/10.3390/molecules27217283 |
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author | Seijas, Luis E. Zambrano, Cesar H. Rodríguez, Vladimir Alí-Torres, Jorge Rincón, Luis Torres, F. Javier |
author_facet | Seijas, Luis E. Zambrano, Cesar H. Rodríguez, Vladimir Alí-Torres, Jorge Rincón, Luis Torres, F. Javier |
author_sort | Seijas, Luis E. |
collection | PubMed |
description | The C–X bond cleavage in different methyl halides (CH(3)X; X = Cl, Br, I) mediated by 5,6-dimethylbenzimidazole-bis(dimethylglyoximate)cobalt(II) (Co(II)Cbx) was theoretically investigated in the present work. An S(N)2-like mechanism was considered to simulate the chemical process where the cobalt atom acts as the nucleophile and the halogen as the leaving group. The reaction path was computed by means of the intrinsic reaction coordinate method and analyzed in detail through the reaction force formalism, the quantum theory of atoms in molecules (QTAIM), and the calculation of one-electron density derived quantities, such as the source function (SF) and the spin density. A thorough comparison of the results with those obtained in the same reaction occurring in presence of 5,6-dimethylbenzimidazole-bis(dimethylglyoximate)cobalt(I) (Co(I)Cbx) was conducted to reveal the main differences between the two cases. The reactions mediated by Co(II)Cbx were observed to be endothermic and possess higher activation energies in contrast to the reactions where the Co(I)Cbx complex is present. The latter was supported by the reaction force results, which suggest a relationship between the activation energy and the ionization potentials of the different nucleophiles present in the cleavage reaction. Moreover, the SF results indicates that the lower axial ligand (i.e., 5,6-dimethylbenzimidazole) exclusively participates on the first stage of the reaction mediated by the Co(II)Cbx complex, while for the Co(I)Cbx case, it appears to have an important role along the whole process. Finally, the QTAIM charge analysis indicates that oxidation of the cobalt atom occurs in both cases; at the same time, it suggests the formation of an uncommon two-center one-electron bond in the Co(II)Cbx case. The latter was confirmed by means of electron localization calculations, which resulted in a larger electron count at the Co–C interatomic region for the Co(I)Cbx case upon comparison with its Co(II)Cbx counterpart. |
format | Online Article Text |
id | pubmed-9658964 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-96589642022-11-15 A Theoretical Study of the C–X Bond Cleavage Mediated by Cob(II)Aloxime Seijas, Luis E. Zambrano, Cesar H. Rodríguez, Vladimir Alí-Torres, Jorge Rincón, Luis Torres, F. Javier Molecules Article The C–X bond cleavage in different methyl halides (CH(3)X; X = Cl, Br, I) mediated by 5,6-dimethylbenzimidazole-bis(dimethylglyoximate)cobalt(II) (Co(II)Cbx) was theoretically investigated in the present work. An S(N)2-like mechanism was considered to simulate the chemical process where the cobalt atom acts as the nucleophile and the halogen as the leaving group. The reaction path was computed by means of the intrinsic reaction coordinate method and analyzed in detail through the reaction force formalism, the quantum theory of atoms in molecules (QTAIM), and the calculation of one-electron density derived quantities, such as the source function (SF) and the spin density. A thorough comparison of the results with those obtained in the same reaction occurring in presence of 5,6-dimethylbenzimidazole-bis(dimethylglyoximate)cobalt(I) (Co(I)Cbx) was conducted to reveal the main differences between the two cases. The reactions mediated by Co(II)Cbx were observed to be endothermic and possess higher activation energies in contrast to the reactions where the Co(I)Cbx complex is present. The latter was supported by the reaction force results, which suggest a relationship between the activation energy and the ionization potentials of the different nucleophiles present in the cleavage reaction. Moreover, the SF results indicates that the lower axial ligand (i.e., 5,6-dimethylbenzimidazole) exclusively participates on the first stage of the reaction mediated by the Co(II)Cbx complex, while for the Co(I)Cbx case, it appears to have an important role along the whole process. Finally, the QTAIM charge analysis indicates that oxidation of the cobalt atom occurs in both cases; at the same time, it suggests the formation of an uncommon two-center one-electron bond in the Co(II)Cbx case. The latter was confirmed by means of electron localization calculations, which resulted in a larger electron count at the Co–C interatomic region for the Co(I)Cbx case upon comparison with its Co(II)Cbx counterpart. MDPI 2022-10-26 /pmc/articles/PMC9658964/ /pubmed/36364105 http://dx.doi.org/10.3390/molecules27217283 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Seijas, Luis E. Zambrano, Cesar H. Rodríguez, Vladimir Alí-Torres, Jorge Rincón, Luis Torres, F. Javier A Theoretical Study of the C–X Bond Cleavage Mediated by Cob(II)Aloxime |
title | A Theoretical Study of the C–X Bond Cleavage Mediated by Cob(II)Aloxime |
title_full | A Theoretical Study of the C–X Bond Cleavage Mediated by Cob(II)Aloxime |
title_fullStr | A Theoretical Study of the C–X Bond Cleavage Mediated by Cob(II)Aloxime |
title_full_unstemmed | A Theoretical Study of the C–X Bond Cleavage Mediated by Cob(II)Aloxime |
title_short | A Theoretical Study of the C–X Bond Cleavage Mediated by Cob(II)Aloxime |
title_sort | theoretical study of the c–x bond cleavage mediated by cob(ii)aloxime |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9658964/ https://www.ncbi.nlm.nih.gov/pubmed/36364105 http://dx.doi.org/10.3390/molecules27217283 |
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