Cargando…

Nanopore 16S Amplicon Sequencing Enhances the Understanding of Pathogens in Medically Intractable Diabetic Foot Infections

CATEGORY: Diabetes INTRODUCTION/PURPOSE: Diabetic foot infections (DFIs) cause substantial morbidity and mortality. The mainstay of the treatment is empiric antibiotics and surgical debridement in severe cases. METHODS: In this study, we performed nanopore 16S rDNA sequencing from the debridement sp...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kim, Daeyoo, Park, Gil Young, Yeon Lee, Dong, Lee, Dong-Oh, Yoon, Youngsik
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	SAGE Publications 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9659927/ http://dx.doi.org/10.1177/2473011421S00723

Ejemplares similares

Diagnosis of Haemophilus influenzae Pneumonia by Nanopore 16S Amplicon Sequencing of Sputum
por: Moon, Jangsup, et al.
Publicado: (2018)

Hindfoot Motion Analysis by Subtalar Compensation and Ankle Osteoarthritis Stage using a 3D Multi- Segment Foot Model
por: Park, Gil Young, et al.
Publicado: (2022)

MinION™ Nanopore Sequencing of Skin Microbiome 16S and 16S-23S rRNA Gene Amplicons
por: Rozas, Miquel, et al.
Publicado: (2022)

Rapid and Accurate Detection of SARS Coronavirus 2 by Nanopore Amplicon Sequencing
por: Li, Xiao-xiao, et al.
Publicado: (2022)

SituSeq: an offline protocol for rapid and remote Nanopore 16S rRNA amplicon sequence analysis
por: Zorz, Jackie, et al.
Publicado: (2023)

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
por: Benítez-Páez, Alfonso, et al.
Publicado: (2016)

Development of an efficient antimicrobial susceptibility testing method with species identification by Nanopore sequencing of 16S rRNA amplicons
por: Kawai, Yuto, et al.
Publicado: (2022)

Rapid Amplicon Nanopore Sequencing (RANS) for the Differential Diagnosis of Monkeypox Virus and Other Vesicle-Forming Pathogens
por: Israeli, Ofir, et al.
Publicado: (2022)

Identification of the microbial diversity after fecal microbiota transplantation therapy for chronic intractable constipation using 16s rRNA amplicon sequencing
por: Ohara, Tadashi
Publicado: (2019)

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
por: Kilianski, Andy, et al.
Publicado: (2015)

Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
por: Cuscó, Anna, et al.
Publicado: (2019)

Molecular diagnosis of patients with hepatitis A virus infection using amplicon-based nanopore sequencing
por: Lee, Geum-Young, et al.
Publicado: (2023)

NanoRTax, a real-time pipeline for taxonomic and diversity analysis of nanopore 16S rRNA amplicon sequencing data
por: Rodríguez-Pérez, Héctor, et al.
Publicado: (2022)

Proof of concept for multiplex amplicon sequencing for mutation identification using the MinION nanopore sequencer
por: Whitford, Whitney, et al.
Publicado: (2022)

16S rRNA Gene Amplicon Sequencing of Contaminated Coastal Sediment Collected from the Taehwa River Estuary, South Korea
por: Woo, Hee-eun, et al.
Publicado: (2021)

Evaluation of full-length nanopore 16S sequencing for detection of pathogens in microbial keratitis
por: Low, Liying, et al.
Publicado: (2021)

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform
por: Calus, Szymon T, et al.
Publicado: (2018)

Microbiome Shift, Diversity, and Overabundance of Opportunistic Pathogens in Bovine Digital Dermatitis Revealed by 16S rRNA Amplicon Sequencing
por: Espiritu, Hector M., et al.
Publicado: (2020)

Comparison of the performance of an amplicon sequencing assay based on Oxford Nanopore technology to real-time PCR assays for detecting bacterial biodefense pathogens
por: Player, Robert, et al.
Publicado: (2020)

Pathways for Understanding Blue Carbon Microbiomes with Amplicon Sequencing
por: Hurtado-McCormick, Valentina, et al.
Publicado: (2022)

Oncogene Concatenated Enriched Amplicon Nanopore Sequencing for rapid, accurate, and affordable somatic mutation detection
por: Thirunavukarasu, Deepak, et al.
Publicado: (2021)

Accuracy of an amplicon-sequencing nanopore approach to identify variants in tuberculosis drug-resistance-associated genes
por: Mariner-Llicer, Carla, et al.
Publicado: (2021)

A framework for real-time monitoring, analysis and adaptive sampling of viral amplicon nanopore sequencing
por: Munro, Rory, et al.
Publicado: (2023)

Next-generation Sequencing of 16S Ribosomal RNA Gene Amplicons
por: Sanschagrin, Sylvie, et al.
Publicado: (2014)

Nanopore 16S sequencing enhances the detection of bacterial meningitis after neurosurgery
por: Jang, Yoonhyuk, et al.
Publicado: (2022)

Comparison of 16S rDNA Amplicon Sequencing With the Culture Method for Diagnosing Causative Pathogens in Bacterial Corneal Infections
por: An, Na, et al.
Publicado: (2022)

Distribution of Microbial Community Structure in Sediment from the Suyeong River and Bay of Busan, Republic of Korea, Determined by 16S rRNA Gene Amplicon Sequencing
por: Jeong, Ilwon, et al.
Publicado: (2021)

Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing
por: Shin, Jongoh, et al.
Publicado: (2016)

Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols
por: Brejová, Broňa, et al.
Publicado: (2021)

Universal whole-genome Oxford nanopore sequencing of SARS-CoV-2 using tiled amplicons
por: Kalendar, Ruslan, et al.
Publicado: (2023)

Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes
por: Karin, Benjamin R., et al.
Publicado: (2023)

Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
por: Matsuo, Yoshiyuki, et al.
Publicado: (2021)

Direct Metatranscriptome RNA-seq and Multiplex RT-PCR Amplicon Sequencing on Nanopore MinION – Promising Strategies for Multiplex Identification of Viable Pathogens in Food
por: Yang, Manyun, et al.
Publicado: (2020)

16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife
por: Galan, Maxime, et al.
Publicado: (2016)

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing
por: Prodan, Andrei, et al.
Publicado: (2020)

Reprocessing 16S rRNA Gene Amplicon Sequencing Studies: (Meta)Data Issues, Robustness, and Reproducibility
por: Kang, Xiongbin, et al.
Publicado: (2021)

Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis
por: Watanabe, Nobuo, et al.
Publicado: (2018)

Diagnosing and tracing the pathogens of infantile infectious diarrhea by amplicon sequencing
por: Liu, Haiyan, et al.
Publicado: (2019)

Nanopore Is Preferable over Illumina for 16S Amplicon Sequencing of the Gut Microbiota When Species-Level Taxonomic Classification, Accurate Estimation of Richness, or Focus on Rare Taxa Is Required
por: Szoboszlay, Márton, et al.
Publicado: (2023)

Analysis of the Microbial Community Structure in Coastal Sediment of an Ascidian Farm in South Korea through 16S rRNA Gene Amplicon Sequencing
por: Jeong, Ilwon, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_ce2e1la1d0ecf5q7n9h362i55m