Cargando…
A novel oxidative stress- and ferroptosis-related gene prognostic signature for distinguishing cold and hot tumors in colorectal cancer
Oxidative stress and ferroptosis exhibit crosstalk in many types of human diseases, including malignant tumors. We aimed to develop an oxidative stress- and ferroptosis-related gene (OFRG) prognostic signature to predict the prognosis and therapeutic response in patients with colorectal cancer (CRC)...
Autores principales: | , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9660228/ https://www.ncbi.nlm.nih.gov/pubmed/36389694 http://dx.doi.org/10.3389/fimmu.2022.1043738 |
_version_ | 1784830375570178048 |
---|---|
author | Wang, Xu Xu, Yuanmin Dai, Longfei Yu, Zhen Wang, Ming Chan, Shixin Sun, Rui Han, Qijun Chen, Jiajie Zuo, Xiaomin Wang, Zhenglin Hu, Xianyu Yang, Yang Zhao, Hu Hu, Kongwang Zhang, Huabing Chen, Wei |
author_facet | Wang, Xu Xu, Yuanmin Dai, Longfei Yu, Zhen Wang, Ming Chan, Shixin Sun, Rui Han, Qijun Chen, Jiajie Zuo, Xiaomin Wang, Zhenglin Hu, Xianyu Yang, Yang Zhao, Hu Hu, Kongwang Zhang, Huabing Chen, Wei |
author_sort | Wang, Xu |
collection | PubMed |
description | Oxidative stress and ferroptosis exhibit crosstalk in many types of human diseases, including malignant tumors. We aimed to develop an oxidative stress- and ferroptosis-related gene (OFRG) prognostic signature to predict the prognosis and therapeutic response in patients with colorectal cancer (CRC). Thirty-four insertion genes between oxidative stress-related genes and ferroptosis-related genes were identified as OFRGs. We then performed bioinformatics analysis of the expression profiles of 34 OFRGs and clinical information of patients obtained from multiple datasets. Patients with CRC were divided into three OFRG clusters, and differentially expressed genes (DEGs) between clusters were identified. OFRG clusters correlated with patient survival and immune cell infiltration. Prognosis-related DEGs in three clusters were used to calculate the risk score, and a prognostic signature was constructed according to the risk score. In this study, patients in the low-risk group had better prognosis, higher immune cell infiltration levels, and better responses to fluorouracil-based chemotherapy and immune checkpoint blockade therapy than high-risk patients; these results were successfully validated with multiple independent datasets. Thus, low-risk CRC could be defined as hot tumors and high-risk CRC could be defined as cold tumors. To further identify potential biomarkers for CRC, the expression levels of five signature genes in CRC and adjacent normal tissues were further verified via an in vitro experiment. In conclusion, we identified 34 OFRGs and constructed an OFRG-related prognostic signature, which showed excellent performance in predicting survival and therapeutic responses for patients with CRC. This could help to distinguish cold and hot tumors in CRC, and the results might be helpful for precise treatment protocols in clinical practice. |
format | Online Article Text |
id | pubmed-9660228 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96602282022-11-15 A novel oxidative stress- and ferroptosis-related gene prognostic signature for distinguishing cold and hot tumors in colorectal cancer Wang, Xu Xu, Yuanmin Dai, Longfei Yu, Zhen Wang, Ming Chan, Shixin Sun, Rui Han, Qijun Chen, Jiajie Zuo, Xiaomin Wang, Zhenglin Hu, Xianyu Yang, Yang Zhao, Hu Hu, Kongwang Zhang, Huabing Chen, Wei Front Immunol Immunology Oxidative stress and ferroptosis exhibit crosstalk in many types of human diseases, including malignant tumors. We aimed to develop an oxidative stress- and ferroptosis-related gene (OFRG) prognostic signature to predict the prognosis and therapeutic response in patients with colorectal cancer (CRC). Thirty-four insertion genes between oxidative stress-related genes and ferroptosis-related genes were identified as OFRGs. We then performed bioinformatics analysis of the expression profiles of 34 OFRGs and clinical information of patients obtained from multiple datasets. Patients with CRC were divided into three OFRG clusters, and differentially expressed genes (DEGs) between clusters were identified. OFRG clusters correlated with patient survival and immune cell infiltration. Prognosis-related DEGs in three clusters were used to calculate the risk score, and a prognostic signature was constructed according to the risk score. In this study, patients in the low-risk group had better prognosis, higher immune cell infiltration levels, and better responses to fluorouracil-based chemotherapy and immune checkpoint blockade therapy than high-risk patients; these results were successfully validated with multiple independent datasets. Thus, low-risk CRC could be defined as hot tumors and high-risk CRC could be defined as cold tumors. To further identify potential biomarkers for CRC, the expression levels of five signature genes in CRC and adjacent normal tissues were further verified via an in vitro experiment. In conclusion, we identified 34 OFRGs and constructed an OFRG-related prognostic signature, which showed excellent performance in predicting survival and therapeutic responses for patients with CRC. This could help to distinguish cold and hot tumors in CRC, and the results might be helpful for precise treatment protocols in clinical practice. Frontiers Media S.A. 2022-10-31 /pmc/articles/PMC9660228/ /pubmed/36389694 http://dx.doi.org/10.3389/fimmu.2022.1043738 Text en Copyright © 2022 Wang, Xu, Dai, Yu, Wang, Chan, Sun, Han, Chen, Zuo, Wang, Hu, Yang, Zhao, Hu, Zhang and Chen https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Wang, Xu Xu, Yuanmin Dai, Longfei Yu, Zhen Wang, Ming Chan, Shixin Sun, Rui Han, Qijun Chen, Jiajie Zuo, Xiaomin Wang, Zhenglin Hu, Xianyu Yang, Yang Zhao, Hu Hu, Kongwang Zhang, Huabing Chen, Wei A novel oxidative stress- and ferroptosis-related gene prognostic signature for distinguishing cold and hot tumors in colorectal cancer |
title | A novel oxidative stress- and ferroptosis-related gene prognostic signature for distinguishing cold and hot tumors in colorectal cancer |
title_full | A novel oxidative stress- and ferroptosis-related gene prognostic signature for distinguishing cold and hot tumors in colorectal cancer |
title_fullStr | A novel oxidative stress- and ferroptosis-related gene prognostic signature for distinguishing cold and hot tumors in colorectal cancer |
title_full_unstemmed | A novel oxidative stress- and ferroptosis-related gene prognostic signature for distinguishing cold and hot tumors in colorectal cancer |
title_short | A novel oxidative stress- and ferroptosis-related gene prognostic signature for distinguishing cold and hot tumors in colorectal cancer |
title_sort | novel oxidative stress- and ferroptosis-related gene prognostic signature for distinguishing cold and hot tumors in colorectal cancer |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9660228/ https://www.ncbi.nlm.nih.gov/pubmed/36389694 http://dx.doi.org/10.3389/fimmu.2022.1043738 |
work_keys_str_mv | AT wangxu anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT xuyuanmin anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT dailongfei anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT yuzhen anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT wangming anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT chanshixin anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT sunrui anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT hanqijun anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT chenjiajie anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT zuoxiaomin anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT wangzhenglin anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT huxianyu anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT yangyang anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT zhaohu anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT hukongwang anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT zhanghuabing anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT chenwei anoveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT wangxu noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT xuyuanmin noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT dailongfei noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT yuzhen noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT wangming noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT chanshixin noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT sunrui noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT hanqijun noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT chenjiajie noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT zuoxiaomin noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT wangzhenglin noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT huxianyu noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT yangyang noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT zhaohu noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT hukongwang noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT zhanghuabing noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer AT chenwei noveloxidativestressandferroptosisrelatedgeneprognosticsignaturefordistinguishingcoldandhottumorsincolorectalcancer |