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The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology

The first complete mitochondrial genome sequencing of Asiatic Water snake or Checkered Keelback or Fowlea piscator (=Xenochrophis piscator) was carried out using Next-Generation Sequencing technology. The complete mitochondrial genome of Asiatic Water snake is 16,999bp long with a base composition o...

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Autores principales: Mitra, Ishani, D, Dinesh, Roy, Soma, Haque, Ikramul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662045/
https://www.ncbi.nlm.nih.gov/pubmed/36386021
http://dx.doi.org/10.1080/23802359.2022.2139157
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author Mitra, Ishani
D, Dinesh
Roy, Soma
Haque, Ikramul
author_facet Mitra, Ishani
D, Dinesh
Roy, Soma
Haque, Ikramul
author_sort Mitra, Ishani
collection PubMed
description The first complete mitochondrial genome sequencing of Asiatic Water snake or Checkered Keelback or Fowlea piscator (=Xenochrophis piscator) was carried out using Next-Generation Sequencing technology. The complete mitochondrial genome of Asiatic Water snake is 16,999bp long with a base composition of 33% A, 28% T, 12% G and 27% C, with a GC content of 39%. Like the typical snake mitochondrial genome, F. piscator also shows relatively similar mitogenome arrangement comprising 37 genes including 13 protein-coding genes, 22 tRNA genes, two rRNA genes and two non-coding regions or a duplicated control region (D-Loop) along with an origin of replication. Nine genes including eight tRNAs and NAD6 were encoded on the Light or L-strand. Phylogenetic analyses using the complete mitochondrial genome of F. piscator demonstrate a close relationship with the family Colubridae and sub family Natricinae.
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spelling pubmed-96620452022-11-15 The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology Mitra, Ishani D, Dinesh Roy, Soma Haque, Ikramul Mitochondrial DNA B Resour Mitogenome Announcement The first complete mitochondrial genome sequencing of Asiatic Water snake or Checkered Keelback or Fowlea piscator (=Xenochrophis piscator) was carried out using Next-Generation Sequencing technology. The complete mitochondrial genome of Asiatic Water snake is 16,999bp long with a base composition of 33% A, 28% T, 12% G and 27% C, with a GC content of 39%. Like the typical snake mitochondrial genome, F. piscator also shows relatively similar mitogenome arrangement comprising 37 genes including 13 protein-coding genes, 22 tRNA genes, two rRNA genes and two non-coding regions or a duplicated control region (D-Loop) along with an origin of replication. Nine genes including eight tRNAs and NAD6 were encoded on the Light or L-strand. Phylogenetic analyses using the complete mitochondrial genome of F. piscator demonstrate a close relationship with the family Colubridae and sub family Natricinae. Taylor & Francis 2022-11-10 /pmc/articles/PMC9662045/ /pubmed/36386021 http://dx.doi.org/10.1080/23802359.2022.2139157 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Mitra, Ishani
D, Dinesh
Roy, Soma
Haque, Ikramul
The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology
title The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology
title_full The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology
title_fullStr The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology
title_full_unstemmed The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology
title_short The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology
title_sort complete mitochondrial genome study and phylogenetic analysis of asiatic water snake (fowlea piscator) using ‘next-generation sequencing’ technology
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662045/
https://www.ncbi.nlm.nih.gov/pubmed/36386021
http://dx.doi.org/10.1080/23802359.2022.2139157
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