Cargando…
The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology
The first complete mitochondrial genome sequencing of Asiatic Water snake or Checkered Keelback or Fowlea piscator (=Xenochrophis piscator) was carried out using Next-Generation Sequencing technology. The complete mitochondrial genome of Asiatic Water snake is 16,999bp long with a base composition o...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662045/ https://www.ncbi.nlm.nih.gov/pubmed/36386021 http://dx.doi.org/10.1080/23802359.2022.2139157 |
_version_ | 1784830607826616320 |
---|---|
author | Mitra, Ishani D, Dinesh Roy, Soma Haque, Ikramul |
author_facet | Mitra, Ishani D, Dinesh Roy, Soma Haque, Ikramul |
author_sort | Mitra, Ishani |
collection | PubMed |
description | The first complete mitochondrial genome sequencing of Asiatic Water snake or Checkered Keelback or Fowlea piscator (=Xenochrophis piscator) was carried out using Next-Generation Sequencing technology. The complete mitochondrial genome of Asiatic Water snake is 16,999bp long with a base composition of 33% A, 28% T, 12% G and 27% C, with a GC content of 39%. Like the typical snake mitochondrial genome, F. piscator also shows relatively similar mitogenome arrangement comprising 37 genes including 13 protein-coding genes, 22 tRNA genes, two rRNA genes and two non-coding regions or a duplicated control region (D-Loop) along with an origin of replication. Nine genes including eight tRNAs and NAD6 were encoded on the Light or L-strand. Phylogenetic analyses using the complete mitochondrial genome of F. piscator demonstrate a close relationship with the family Colubridae and sub family Natricinae. |
format | Online Article Text |
id | pubmed-9662045 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-96620452022-11-15 The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology Mitra, Ishani D, Dinesh Roy, Soma Haque, Ikramul Mitochondrial DNA B Resour Mitogenome Announcement The first complete mitochondrial genome sequencing of Asiatic Water snake or Checkered Keelback or Fowlea piscator (=Xenochrophis piscator) was carried out using Next-Generation Sequencing technology. The complete mitochondrial genome of Asiatic Water snake is 16,999bp long with a base composition of 33% A, 28% T, 12% G and 27% C, with a GC content of 39%. Like the typical snake mitochondrial genome, F. piscator also shows relatively similar mitogenome arrangement comprising 37 genes including 13 protein-coding genes, 22 tRNA genes, two rRNA genes and two non-coding regions or a duplicated control region (D-Loop) along with an origin of replication. Nine genes including eight tRNAs and NAD6 were encoded on the Light or L-strand. Phylogenetic analyses using the complete mitochondrial genome of F. piscator demonstrate a close relationship with the family Colubridae and sub family Natricinae. Taylor & Francis 2022-11-10 /pmc/articles/PMC9662045/ /pubmed/36386021 http://dx.doi.org/10.1080/23802359.2022.2139157 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Mitra, Ishani D, Dinesh Roy, Soma Haque, Ikramul The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology |
title | The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology |
title_full | The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology |
title_fullStr | The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology |
title_full_unstemmed | The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology |
title_short | The complete mitochondrial genome study and phylogenetic analysis of Asiatic Water Snake (Fowlea piscator) using ‘Next-Generation Sequencing’ technology |
title_sort | complete mitochondrial genome study and phylogenetic analysis of asiatic water snake (fowlea piscator) using ‘next-generation sequencing’ technology |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662045/ https://www.ncbi.nlm.nih.gov/pubmed/36386021 http://dx.doi.org/10.1080/23802359.2022.2139157 |
work_keys_str_mv | AT mitraishani thecompletemitochondrialgenomestudyandphylogeneticanalysisofasiaticwatersnakefowleapiscatorusingnextgenerationsequencingtechnology AT ddinesh thecompletemitochondrialgenomestudyandphylogeneticanalysisofasiaticwatersnakefowleapiscatorusingnextgenerationsequencingtechnology AT roysoma thecompletemitochondrialgenomestudyandphylogeneticanalysisofasiaticwatersnakefowleapiscatorusingnextgenerationsequencingtechnology AT haqueikramul thecompletemitochondrialgenomestudyandphylogeneticanalysisofasiaticwatersnakefowleapiscatorusingnextgenerationsequencingtechnology AT mitraishani completemitochondrialgenomestudyandphylogeneticanalysisofasiaticwatersnakefowleapiscatorusingnextgenerationsequencingtechnology AT ddinesh completemitochondrialgenomestudyandphylogeneticanalysisofasiaticwatersnakefowleapiscatorusingnextgenerationsequencingtechnology AT roysoma completemitochondrialgenomestudyandphylogeneticanalysisofasiaticwatersnakefowleapiscatorusingnextgenerationsequencingtechnology AT haqueikramul completemitochondrialgenomestudyandphylogeneticanalysisofasiaticwatersnakefowleapiscatorusingnextgenerationsequencingtechnology |