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Joint modeling under competing risks: Application to survival prediction in patients admitted in Intensive Care Unit for sepsis with daily Sequential Organ Failure Assessment score assessments
Joint models of longitudinal process and time‐to‐event data have recently gained attention, notably to provide individualized dynamic predictions. In the presence of competing risks, models published mostly involve cause‐specific hazard functions jointly estimated with a linear or generalized linear...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662207/ https://www.ncbi.nlm.nih.gov/pubmed/36201150 http://dx.doi.org/10.1002/psp4.12856 |
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author | Lavalley‐Morelle, Alexandra Timsit, Jean‐François Mentré, France Mullaert, Jimmy |
author_facet | Lavalley‐Morelle, Alexandra Timsit, Jean‐François Mentré, France Mullaert, Jimmy |
author_sort | Lavalley‐Morelle, Alexandra |
collection | PubMed |
description | Joint models of longitudinal process and time‐to‐event data have recently gained attention, notably to provide individualized dynamic predictions. In the presence of competing risks, models published mostly involve cause‐specific hazard functions jointly estimated with a linear or generalized linear model. Here we propose to extend the modeling to full parametric joint estimation of a nonlinear mixed‐effects model and a subdistribution hazard model. We apply this approach on 6046 patients admitted in intensive care unit (ICU) for sepsis with daily Sequential Organ Failure Assessment (SOFA) score measurements. The joint model is built on a randomly selected training set of two thirds of patients and links the current predicted SOFA measurement to the instantaneous risks of ICU death and discharge from ICU, both adjusted on the patient age. Stochastic Approximation Expectation Maximization algorithm in Monolix is used for estimation. SOFA evolution is significantly associated with both risks: 0.37, 95% confidence interval (CI) = [0.35, 0.39] for the risk of death and −0.38, 95% CI = [−0.39, −0.36] for the risk of discharge. A simulation study, inspired from the real data, shows the good estimation properties of the parameters. We assess on the validation set the added value of modeling the longitudinal SOFA follow‐up for the prediction of death compared with a model that includes only SOFA at baseline. Time‐dependent receiver operating characteristic area under the curve and Brier scores show that when enough longitudinal individual information is available, joint modeling provides better predictions. The methodology can easily be applied to other clinical applications because of the general form of the model. |
format | Online Article Text |
id | pubmed-9662207 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96622072022-11-14 Joint modeling under competing risks: Application to survival prediction in patients admitted in Intensive Care Unit for sepsis with daily Sequential Organ Failure Assessment score assessments Lavalley‐Morelle, Alexandra Timsit, Jean‐François Mentré, France Mullaert, Jimmy CPT Pharmacometrics Syst Pharmacol Research Joint models of longitudinal process and time‐to‐event data have recently gained attention, notably to provide individualized dynamic predictions. In the presence of competing risks, models published mostly involve cause‐specific hazard functions jointly estimated with a linear or generalized linear model. Here we propose to extend the modeling to full parametric joint estimation of a nonlinear mixed‐effects model and a subdistribution hazard model. We apply this approach on 6046 patients admitted in intensive care unit (ICU) for sepsis with daily Sequential Organ Failure Assessment (SOFA) score measurements. The joint model is built on a randomly selected training set of two thirds of patients and links the current predicted SOFA measurement to the instantaneous risks of ICU death and discharge from ICU, both adjusted on the patient age. Stochastic Approximation Expectation Maximization algorithm in Monolix is used for estimation. SOFA evolution is significantly associated with both risks: 0.37, 95% confidence interval (CI) = [0.35, 0.39] for the risk of death and −0.38, 95% CI = [−0.39, −0.36] for the risk of discharge. A simulation study, inspired from the real data, shows the good estimation properties of the parameters. We assess on the validation set the added value of modeling the longitudinal SOFA follow‐up for the prediction of death compared with a model that includes only SOFA at baseline. Time‐dependent receiver operating characteristic area under the curve and Brier scores show that when enough longitudinal individual information is available, joint modeling provides better predictions. The methodology can easily be applied to other clinical applications because of the general form of the model. John Wiley and Sons Inc. 2022-10-06 2022-11 /pmc/articles/PMC9662207/ /pubmed/36201150 http://dx.doi.org/10.1002/psp4.12856 Text en © 2022 The Authors. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Lavalley‐Morelle, Alexandra Timsit, Jean‐François Mentré, France Mullaert, Jimmy Joint modeling under competing risks: Application to survival prediction in patients admitted in Intensive Care Unit for sepsis with daily Sequential Organ Failure Assessment score assessments |
title | Joint modeling under competing risks: Application to survival prediction in patients admitted in Intensive Care Unit for sepsis with daily Sequential Organ Failure Assessment score assessments |
title_full | Joint modeling under competing risks: Application to survival prediction in patients admitted in Intensive Care Unit for sepsis with daily Sequential Organ Failure Assessment score assessments |
title_fullStr | Joint modeling under competing risks: Application to survival prediction in patients admitted in Intensive Care Unit for sepsis with daily Sequential Organ Failure Assessment score assessments |
title_full_unstemmed | Joint modeling under competing risks: Application to survival prediction in patients admitted in Intensive Care Unit for sepsis with daily Sequential Organ Failure Assessment score assessments |
title_short | Joint modeling under competing risks: Application to survival prediction in patients admitted in Intensive Care Unit for sepsis with daily Sequential Organ Failure Assessment score assessments |
title_sort | joint modeling under competing risks: application to survival prediction in patients admitted in intensive care unit for sepsis with daily sequential organ failure assessment score assessments |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662207/ https://www.ncbi.nlm.nih.gov/pubmed/36201150 http://dx.doi.org/10.1002/psp4.12856 |
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