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Characterization of KRAS Mutation Subtypes in Non–small Cell Lung Cancer

KRAS is the most commonly mutated oncogene in NSCLC and development of direct KRAS inhibitors has renewed interest in this molecular variant. Different KRAS mutations may represent a unique biologic context with different prognostic and therapeutic impact. We sought to characterize genomic landscape...

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Autores principales: Judd, Julia, Abdel Karim, Nagla, Khan, Hina, Naqash, Abdul Rafeh, Baca, Yasmine, Xiu, Joanne, VanderWalde, Ari M., Mamdani, Hirva, Raez, Luis E., Nagasaka, Misako, Pai, Sachin Gopalkrishna, Socinski, Mark A., Nieva, Jorge J., Kim, Chul, Wozniak, Antoinette J., Ikpeazu, Chukwuemeka, de Lima Lopes, Gilberto, Spira, Alexander I., Korn, W. Michael, Kim, Edward S., Liu, Stephen V., Borghaei, Hossein
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for Cancer Research 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662933/
https://www.ncbi.nlm.nih.gov/pubmed/34518295
http://dx.doi.org/10.1158/1535-7163.MCT-21-0201
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author Judd, Julia
Abdel Karim, Nagla
Khan, Hina
Naqash, Abdul Rafeh
Baca, Yasmine
Xiu, Joanne
VanderWalde, Ari M.
Mamdani, Hirva
Raez, Luis E.
Nagasaka, Misako
Pai, Sachin Gopalkrishna
Socinski, Mark A.
Nieva, Jorge J.
Kim, Chul
Wozniak, Antoinette J.
Ikpeazu, Chukwuemeka
de Lima Lopes, Gilberto
Spira, Alexander I.
Korn, W. Michael
Kim, Edward S.
Liu, Stephen V.
Borghaei, Hossein
author_facet Judd, Julia
Abdel Karim, Nagla
Khan, Hina
Naqash, Abdul Rafeh
Baca, Yasmine
Xiu, Joanne
VanderWalde, Ari M.
Mamdani, Hirva
Raez, Luis E.
Nagasaka, Misako
Pai, Sachin Gopalkrishna
Socinski, Mark A.
Nieva, Jorge J.
Kim, Chul
Wozniak, Antoinette J.
Ikpeazu, Chukwuemeka
de Lima Lopes, Gilberto
Spira, Alexander I.
Korn, W. Michael
Kim, Edward S.
Liu, Stephen V.
Borghaei, Hossein
author_sort Judd, Julia
collection PubMed
description KRAS is the most commonly mutated oncogene in NSCLC and development of direct KRAS inhibitors has renewed interest in this molecular variant. Different KRAS mutations may represent a unique biologic context with different prognostic and therapeutic impact. We sought to characterize genomic landscapes of advanced, KRAS-mutated non–small cell lung cancer (NSCLC) in a large national cohort to help guide future therapeutic development. Molecular profiles of 17,095 NSCLC specimens were obtained using DNA next-generation sequencing of 592 genes (Caris Life Sciences) and classified on the basis of presence and subtype of KRAS mutations. Co-occurring genomic alterations, tumor mutational burden (TMB), and PD-L1 expression [22C3, tumor proportion score (TPS) score] were analyzed by KRAS mutation type. Across the cohort, 4,706 (27.5%) samples harbored a KRAS mutation. The most common subtype was G12C (40%), followed by G12V (19%) and G12D (15%). The prevalence of KRAS mutations was 37.2% among adenocarcinomas and 4.4% in squamous cell carcinomas. Rates of high TMB (≥10 mutations/Mb) and PD-L1 expression varied across KRAS mutation subtypes. KRAS G12C was the most likely to be PD-L1 positive (65.5% TPS ≥ 1%) and PD-L1 high (41.3% TPS ≥ 50%). STK11 was mutated in 8.6% of KRAS wild-type NSCLC but more frequent in KRAS-mutant NSCLC, with the highest rate in G13 (36.2%). TP53 mutations were more frequent in KRAS wild-type NSCLC (73.6%). KRAS mutation subtypes have different co-occurring mutations and a distinct genomic landscape. The clinical relevance of these differences in the context of specific therapeutic interventions warrants investigation.
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spelling pubmed-96629332023-01-05 Characterization of KRAS Mutation Subtypes in Non–small Cell Lung Cancer Judd, Julia Abdel Karim, Nagla Khan, Hina Naqash, Abdul Rafeh Baca, Yasmine Xiu, Joanne VanderWalde, Ari M. Mamdani, Hirva Raez, Luis E. Nagasaka, Misako Pai, Sachin Gopalkrishna Socinski, Mark A. Nieva, Jorge J. Kim, Chul Wozniak, Antoinette J. Ikpeazu, Chukwuemeka de Lima Lopes, Gilberto Spira, Alexander I. Korn, W. Michael Kim, Edward S. Liu, Stephen V. Borghaei, Hossein Mol Cancer Ther Companion Diagnostic, Pharmacogenomic, and Cancer Biomarkers KRAS is the most commonly mutated oncogene in NSCLC and development of direct KRAS inhibitors has renewed interest in this molecular variant. Different KRAS mutations may represent a unique biologic context with different prognostic and therapeutic impact. We sought to characterize genomic landscapes of advanced, KRAS-mutated non–small cell lung cancer (NSCLC) in a large national cohort to help guide future therapeutic development. Molecular profiles of 17,095 NSCLC specimens were obtained using DNA next-generation sequencing of 592 genes (Caris Life Sciences) and classified on the basis of presence and subtype of KRAS mutations. Co-occurring genomic alterations, tumor mutational burden (TMB), and PD-L1 expression [22C3, tumor proportion score (TPS) score] were analyzed by KRAS mutation type. Across the cohort, 4,706 (27.5%) samples harbored a KRAS mutation. The most common subtype was G12C (40%), followed by G12V (19%) and G12D (15%). The prevalence of KRAS mutations was 37.2% among adenocarcinomas and 4.4% in squamous cell carcinomas. Rates of high TMB (≥10 mutations/Mb) and PD-L1 expression varied across KRAS mutation subtypes. KRAS G12C was the most likely to be PD-L1 positive (65.5% TPS ≥ 1%) and PD-L1 high (41.3% TPS ≥ 50%). STK11 was mutated in 8.6% of KRAS wild-type NSCLC but more frequent in KRAS-mutant NSCLC, with the highest rate in G13 (36.2%). TP53 mutations were more frequent in KRAS wild-type NSCLC (73.6%). KRAS mutation subtypes have different co-occurring mutations and a distinct genomic landscape. The clinical relevance of these differences in the context of specific therapeutic interventions warrants investigation. American Association for Cancer Research 2021-12-01 2021-09-13 /pmc/articles/PMC9662933/ /pubmed/34518295 http://dx.doi.org/10.1158/1535-7163.MCT-21-0201 Text en ©2021 The Authors; Published by the American Association for Cancer Research https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) license.
spellingShingle Companion Diagnostic, Pharmacogenomic, and Cancer Biomarkers
Judd, Julia
Abdel Karim, Nagla
Khan, Hina
Naqash, Abdul Rafeh
Baca, Yasmine
Xiu, Joanne
VanderWalde, Ari M.
Mamdani, Hirva
Raez, Luis E.
Nagasaka, Misako
Pai, Sachin Gopalkrishna
Socinski, Mark A.
Nieva, Jorge J.
Kim, Chul
Wozniak, Antoinette J.
Ikpeazu, Chukwuemeka
de Lima Lopes, Gilberto
Spira, Alexander I.
Korn, W. Michael
Kim, Edward S.
Liu, Stephen V.
Borghaei, Hossein
Characterization of KRAS Mutation Subtypes in Non–small Cell Lung Cancer
title Characterization of KRAS Mutation Subtypes in Non–small Cell Lung Cancer
title_full Characterization of KRAS Mutation Subtypes in Non–small Cell Lung Cancer
title_fullStr Characterization of KRAS Mutation Subtypes in Non–small Cell Lung Cancer
title_full_unstemmed Characterization of KRAS Mutation Subtypes in Non–small Cell Lung Cancer
title_short Characterization of KRAS Mutation Subtypes in Non–small Cell Lung Cancer
title_sort characterization of kras mutation subtypes in non–small cell lung cancer
topic Companion Diagnostic, Pharmacogenomic, and Cancer Biomarkers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662933/
https://www.ncbi.nlm.nih.gov/pubmed/34518295
http://dx.doi.org/10.1158/1535-7163.MCT-21-0201
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