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Enhanced survival prediction using explainable artificial intelligence in heart transplantation

The most limiting factor in heart transplantation is the lack of donor organs. With enhanced prediction of outcome, it may be possible to increase the life-years from the organs that become available. Applications of machine learning to tabular data, typical of clinical decision support, pose the pr...

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Autores principales: Lisboa, Paulo J. G., Jayabalan, Manoj, Ortega-Martorell, Sandra, Olier, Ivan, Medved, Dennis, Nilsson, Johan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9663731/
https://www.ncbi.nlm.nih.gov/pubmed/36376402
http://dx.doi.org/10.1038/s41598-022-23817-2
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author Lisboa, Paulo J. G.
Jayabalan, Manoj
Ortega-Martorell, Sandra
Olier, Ivan
Medved, Dennis
Nilsson, Johan
author_facet Lisboa, Paulo J. G.
Jayabalan, Manoj
Ortega-Martorell, Sandra
Olier, Ivan
Medved, Dennis
Nilsson, Johan
author_sort Lisboa, Paulo J. G.
collection PubMed
description The most limiting factor in heart transplantation is the lack of donor organs. With enhanced prediction of outcome, it may be possible to increase the life-years from the organs that become available. Applications of machine learning to tabular data, typical of clinical decision support, pose the practical question of interpretation, which has technical and potential ethical implications. In particular, there is an issue of principle about the predictability of complex data and whether this is inherent in the data or strongly dependent on the choice of machine learning model, leading to the so-called accuracy-interpretability trade-off. We model 1-year mortality in heart transplantation data with a self-explaining neural network, which is benchmarked against a deep learning model on the same development data, in an external validation study with two data sets: (1) UNOS transplants in 2017–2018 (n = 4750) for which the self-explaining and deep learning models are comparable in their AUROC 0.628 [0.602,0.654] cf. 0.635 [0.609,0.662] and (2) Scandinavian transplants during 1997–2018 (n = 2293), showing good calibration with AUROCs of 0.626 [0.588,0.665] and 0.634 [0.570, 0.698], respectively, with and without missing data (n = 982). This shows that for tabular data, predictive models can be transparent and capture important nonlinearities, retaining full predictive performance.
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spelling pubmed-96637312022-11-15 Enhanced survival prediction using explainable artificial intelligence in heart transplantation Lisboa, Paulo J. G. Jayabalan, Manoj Ortega-Martorell, Sandra Olier, Ivan Medved, Dennis Nilsson, Johan Sci Rep Article The most limiting factor in heart transplantation is the lack of donor organs. With enhanced prediction of outcome, it may be possible to increase the life-years from the organs that become available. Applications of machine learning to tabular data, typical of clinical decision support, pose the practical question of interpretation, which has technical and potential ethical implications. In particular, there is an issue of principle about the predictability of complex data and whether this is inherent in the data or strongly dependent on the choice of machine learning model, leading to the so-called accuracy-interpretability trade-off. We model 1-year mortality in heart transplantation data with a self-explaining neural network, which is benchmarked against a deep learning model on the same development data, in an external validation study with two data sets: (1) UNOS transplants in 2017–2018 (n = 4750) for which the self-explaining and deep learning models are comparable in their AUROC 0.628 [0.602,0.654] cf. 0.635 [0.609,0.662] and (2) Scandinavian transplants during 1997–2018 (n = 2293), showing good calibration with AUROCs of 0.626 [0.588,0.665] and 0.634 [0.570, 0.698], respectively, with and without missing data (n = 982). This shows that for tabular data, predictive models can be transparent and capture important nonlinearities, retaining full predictive performance. Nature Publishing Group UK 2022-11-14 /pmc/articles/PMC9663731/ /pubmed/36376402 http://dx.doi.org/10.1038/s41598-022-23817-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lisboa, Paulo J. G.
Jayabalan, Manoj
Ortega-Martorell, Sandra
Olier, Ivan
Medved, Dennis
Nilsson, Johan
Enhanced survival prediction using explainable artificial intelligence in heart transplantation
title Enhanced survival prediction using explainable artificial intelligence in heart transplantation
title_full Enhanced survival prediction using explainable artificial intelligence in heart transplantation
title_fullStr Enhanced survival prediction using explainable artificial intelligence in heart transplantation
title_full_unstemmed Enhanced survival prediction using explainable artificial intelligence in heart transplantation
title_short Enhanced survival prediction using explainable artificial intelligence in heart transplantation
title_sort enhanced survival prediction using explainable artificial intelligence in heart transplantation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9663731/
https://www.ncbi.nlm.nih.gov/pubmed/36376402
http://dx.doi.org/10.1038/s41598-022-23817-2
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