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Genetic estimation of correlations and causalities between multifaceted modifiable factors and gastro-oesophageal reflux disease
BACKGROUND: Gastro-oesophageal reflux disease (GORD) is a common gastrointestinal dysfunction that significantly affects the quality of daily life, and health interventions are challenging to prevent the risk of GORD. In this study, we used Mendelian randomization framework to genetically determine...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9663808/ https://www.ncbi.nlm.nih.gov/pubmed/36386930 http://dx.doi.org/10.3389/fnut.2022.1009122 |
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author | Sun, Yuanlin Cao, Xueyuan Cao, Donghui Cui, Yingnan Su, Kaisheng Jia, Zhifang Wu, Yanhua Jiang, Jing |
author_facet | Sun, Yuanlin Cao, Xueyuan Cao, Donghui Cui, Yingnan Su, Kaisheng Jia, Zhifang Wu, Yanhua Jiang, Jing |
author_sort | Sun, Yuanlin |
collection | PubMed |
description | BACKGROUND: Gastro-oesophageal reflux disease (GORD) is a common gastrointestinal dysfunction that significantly affects the quality of daily life, and health interventions are challenging to prevent the risk of GORD. In this study, we used Mendelian randomization framework to genetically determine the causal associations between multifaceted modifiable factors and the risk of GORD. MATERIALS AND METHODS: Sixty-six exposures with available instrumental variables (IVs) across 6 modifiable pathways were included in the univariable MR analysis (UVMR). Summary-level genome-wide association studies (GWAS) datasets for GORD were retrieved from the Neale Lab (GORD(Neale), Ncases = 29975, Ncontrols = 390556) and FinnGen (GORD(Finn), Ncases = 13141, Ncontrols = 89695). Using the METAL software, meta-analysis for single nucleotide polymorphisms (SNPs) from GORD(Neale) and GORD(Finn) was conducted with an inverse variance weighted (IVW) fixed-effect model. Moreover, we leveraged partition around medoids (PAM) clustering algorithm to cluster genetic correlation subtypes, whose hub exposures were conditioned for multivariable MR (MVMR) analyses. P-values were adjusted with Bonferroni multiple comparisons. RESULTS: Significant causal associations were identified between 26 exposures (15 risk exposures and 11 protective exposures) and the risk of GORD. Among them, 13 risk exposures [lifetime smoking, cigarette consumption, insomnia, short sleep, leisure sedentary behavior (TV watching), body mass index (BMI), body fat percentage, whole body fat mass, visceral adipose tissue, waist circumference, hip circumference, major depressive disorder, and anxious feeling], and 10 protective exposures (leisure sedentary behavior (computer use), sitting height, hand grip strength (left and right), birth weight, life satisfaction, positive affect, income, educational attainment, and intelligence) showed novel significant causal associations with the risk of GORD. Moreover, 13 exposures still demonstrated independent associations with the risk of GORD following MVMR analyses conditioned for hub exposures (educational attainment, smoking initiation and BMI). In addition, 12 exposures showed suggestive causal associations with the risk of GORD. CONCLUSION: This study systematically elucidated the modifiable factors causally associated with the risk of GORD from multifaceted perspectives, which provided implications for prevention and treatment of GORD. |
format | Online Article Text |
id | pubmed-9663808 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96638082022-11-15 Genetic estimation of correlations and causalities between multifaceted modifiable factors and gastro-oesophageal reflux disease Sun, Yuanlin Cao, Xueyuan Cao, Donghui Cui, Yingnan Su, Kaisheng Jia, Zhifang Wu, Yanhua Jiang, Jing Front Nutr Nutrition BACKGROUND: Gastro-oesophageal reflux disease (GORD) is a common gastrointestinal dysfunction that significantly affects the quality of daily life, and health interventions are challenging to prevent the risk of GORD. In this study, we used Mendelian randomization framework to genetically determine the causal associations between multifaceted modifiable factors and the risk of GORD. MATERIALS AND METHODS: Sixty-six exposures with available instrumental variables (IVs) across 6 modifiable pathways were included in the univariable MR analysis (UVMR). Summary-level genome-wide association studies (GWAS) datasets for GORD were retrieved from the Neale Lab (GORD(Neale), Ncases = 29975, Ncontrols = 390556) and FinnGen (GORD(Finn), Ncases = 13141, Ncontrols = 89695). Using the METAL software, meta-analysis for single nucleotide polymorphisms (SNPs) from GORD(Neale) and GORD(Finn) was conducted with an inverse variance weighted (IVW) fixed-effect model. Moreover, we leveraged partition around medoids (PAM) clustering algorithm to cluster genetic correlation subtypes, whose hub exposures were conditioned for multivariable MR (MVMR) analyses. P-values were adjusted with Bonferroni multiple comparisons. RESULTS: Significant causal associations were identified between 26 exposures (15 risk exposures and 11 protective exposures) and the risk of GORD. Among them, 13 risk exposures [lifetime smoking, cigarette consumption, insomnia, short sleep, leisure sedentary behavior (TV watching), body mass index (BMI), body fat percentage, whole body fat mass, visceral adipose tissue, waist circumference, hip circumference, major depressive disorder, and anxious feeling], and 10 protective exposures (leisure sedentary behavior (computer use), sitting height, hand grip strength (left and right), birth weight, life satisfaction, positive affect, income, educational attainment, and intelligence) showed novel significant causal associations with the risk of GORD. Moreover, 13 exposures still demonstrated independent associations with the risk of GORD following MVMR analyses conditioned for hub exposures (educational attainment, smoking initiation and BMI). In addition, 12 exposures showed suggestive causal associations with the risk of GORD. CONCLUSION: This study systematically elucidated the modifiable factors causally associated with the risk of GORD from multifaceted perspectives, which provided implications for prevention and treatment of GORD. Frontiers Media S.A. 2022-11-01 /pmc/articles/PMC9663808/ /pubmed/36386930 http://dx.doi.org/10.3389/fnut.2022.1009122 Text en Copyright © 2022 Sun, Cao, Cao, Cui, Su, Jia, Wu and Jiang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Nutrition Sun, Yuanlin Cao, Xueyuan Cao, Donghui Cui, Yingnan Su, Kaisheng Jia, Zhifang Wu, Yanhua Jiang, Jing Genetic estimation of correlations and causalities between multifaceted modifiable factors and gastro-oesophageal reflux disease |
title | Genetic estimation of correlations and causalities between multifaceted modifiable factors and gastro-oesophageal reflux disease |
title_full | Genetic estimation of correlations and causalities between multifaceted modifiable factors and gastro-oesophageal reflux disease |
title_fullStr | Genetic estimation of correlations and causalities between multifaceted modifiable factors and gastro-oesophageal reflux disease |
title_full_unstemmed | Genetic estimation of correlations and causalities between multifaceted modifiable factors and gastro-oesophageal reflux disease |
title_short | Genetic estimation of correlations and causalities between multifaceted modifiable factors and gastro-oesophageal reflux disease |
title_sort | genetic estimation of correlations and causalities between multifaceted modifiable factors and gastro-oesophageal reflux disease |
topic | Nutrition |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9663808/ https://www.ncbi.nlm.nih.gov/pubmed/36386930 http://dx.doi.org/10.3389/fnut.2022.1009122 |
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