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The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma

Pyroptosis is a type of programmed cell death that is associated with tumor development, prognosis, and therapeutic response. The significance of pyroptosis-related genes (PRGs) in the tumor microenvironment (TME) remains unclear. We examined the expression patterns of PRGs in 141 OS samples from tw...

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Autores principales: Han, Jun, Hu, Yunxiang, Ding, Shengqiang, Liu, Sanmao, Wang, Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9664215/
https://www.ncbi.nlm.nih.gov/pubmed/36389801
http://dx.doi.org/10.3389/fimmu.2022.974916
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author Han, Jun
Hu, Yunxiang
Ding, Shengqiang
Liu, Sanmao
Wang, Hong
author_facet Han, Jun
Hu, Yunxiang
Ding, Shengqiang
Liu, Sanmao
Wang, Hong
author_sort Han, Jun
collection PubMed
description Pyroptosis is a type of programmed cell death that is associated with tumor development, prognosis, and therapeutic response. The significance of pyroptosis-related genes (PRGs) in the tumor microenvironment (TME) remains unclear. We examined the expression patterns of PRGs in 141 OS samples from two different datasets and characterized the genetic and transcriptional changes in PRGs. Based on these PRGs, all OS samples could be classified into two clusters. We discovered that multilayer PRG changes were linked to clinicopathological traits, prognosis, and TME characteristics in two separate genetic subtypes. The PRG score was then developed for predicting overall survival, and its predictive efficacy in OS patients was tested. As a result, we developed a very precise nomogram to improve the PRG-predictive model in clinical application. Furthermore, a competing endogenous RNA (ceRNA) network was built to find a LAMTOR5-AS1/hsa-miR-23a-3p/TP63 regulatory axis. Through experimental verification, it was found that the pyroptosis gene TP63 plays an important role in the regulation of osteosarcoma pyroptosis. The possible functions of PRGs in the TME, clinicopathological characteristics, and prognosis were established in our investigation of PRGs in OS. These findings may aid in our understanding of PRGs in OS as well as provide a novel way for prognostic evaluation and the creation of more effective immunotherapy treatments.
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spelling pubmed-96642152022-11-15 The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma Han, Jun Hu, Yunxiang Ding, Shengqiang Liu, Sanmao Wang, Hong Front Immunol Immunology Pyroptosis is a type of programmed cell death that is associated with tumor development, prognosis, and therapeutic response. The significance of pyroptosis-related genes (PRGs) in the tumor microenvironment (TME) remains unclear. We examined the expression patterns of PRGs in 141 OS samples from two different datasets and characterized the genetic and transcriptional changes in PRGs. Based on these PRGs, all OS samples could be classified into two clusters. We discovered that multilayer PRG changes were linked to clinicopathological traits, prognosis, and TME characteristics in two separate genetic subtypes. The PRG score was then developed for predicting overall survival, and its predictive efficacy in OS patients was tested. As a result, we developed a very precise nomogram to improve the PRG-predictive model in clinical application. Furthermore, a competing endogenous RNA (ceRNA) network was built to find a LAMTOR5-AS1/hsa-miR-23a-3p/TP63 regulatory axis. Through experimental verification, it was found that the pyroptosis gene TP63 plays an important role in the regulation of osteosarcoma pyroptosis. The possible functions of PRGs in the TME, clinicopathological characteristics, and prognosis were established in our investigation of PRGs in OS. These findings may aid in our understanding of PRGs in OS as well as provide a novel way for prognostic evaluation and the creation of more effective immunotherapy treatments. Frontiers Media S.A. 2022-11-01 /pmc/articles/PMC9664215/ /pubmed/36389801 http://dx.doi.org/10.3389/fimmu.2022.974916 Text en Copyright © 2022 Han, Hu, Ding, Liu and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Han, Jun
Hu, Yunxiang
Ding, Shengqiang
Liu, Sanmao
Wang, Hong
The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma
title The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma
title_full The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma
title_fullStr The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma
title_full_unstemmed The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma
title_short The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma
title_sort analysis of the pyroptosis-related genes and hub gene tp63 cerna axis in osteosarcoma
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9664215/
https://www.ncbi.nlm.nih.gov/pubmed/36389801
http://dx.doi.org/10.3389/fimmu.2022.974916
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