Cargando…
The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma
Pyroptosis is a type of programmed cell death that is associated with tumor development, prognosis, and therapeutic response. The significance of pyroptosis-related genes (PRGs) in the tumor microenvironment (TME) remains unclear. We examined the expression patterns of PRGs in 141 OS samples from tw...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9664215/ https://www.ncbi.nlm.nih.gov/pubmed/36389801 http://dx.doi.org/10.3389/fimmu.2022.974916 |
_version_ | 1784831053294206976 |
---|---|
author | Han, Jun Hu, Yunxiang Ding, Shengqiang Liu, Sanmao Wang, Hong |
author_facet | Han, Jun Hu, Yunxiang Ding, Shengqiang Liu, Sanmao Wang, Hong |
author_sort | Han, Jun |
collection | PubMed |
description | Pyroptosis is a type of programmed cell death that is associated with tumor development, prognosis, and therapeutic response. The significance of pyroptosis-related genes (PRGs) in the tumor microenvironment (TME) remains unclear. We examined the expression patterns of PRGs in 141 OS samples from two different datasets and characterized the genetic and transcriptional changes in PRGs. Based on these PRGs, all OS samples could be classified into two clusters. We discovered that multilayer PRG changes were linked to clinicopathological traits, prognosis, and TME characteristics in two separate genetic subtypes. The PRG score was then developed for predicting overall survival, and its predictive efficacy in OS patients was tested. As a result, we developed a very precise nomogram to improve the PRG-predictive model in clinical application. Furthermore, a competing endogenous RNA (ceRNA) network was built to find a LAMTOR5-AS1/hsa-miR-23a-3p/TP63 regulatory axis. Through experimental verification, it was found that the pyroptosis gene TP63 plays an important role in the regulation of osteosarcoma pyroptosis. The possible functions of PRGs in the TME, clinicopathological characteristics, and prognosis were established in our investigation of PRGs in OS. These findings may aid in our understanding of PRGs in OS as well as provide a novel way for prognostic evaluation and the creation of more effective immunotherapy treatments. |
format | Online Article Text |
id | pubmed-9664215 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-96642152022-11-15 The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma Han, Jun Hu, Yunxiang Ding, Shengqiang Liu, Sanmao Wang, Hong Front Immunol Immunology Pyroptosis is a type of programmed cell death that is associated with tumor development, prognosis, and therapeutic response. The significance of pyroptosis-related genes (PRGs) in the tumor microenvironment (TME) remains unclear. We examined the expression patterns of PRGs in 141 OS samples from two different datasets and characterized the genetic and transcriptional changes in PRGs. Based on these PRGs, all OS samples could be classified into two clusters. We discovered that multilayer PRG changes were linked to clinicopathological traits, prognosis, and TME characteristics in two separate genetic subtypes. The PRG score was then developed for predicting overall survival, and its predictive efficacy in OS patients was tested. As a result, we developed a very precise nomogram to improve the PRG-predictive model in clinical application. Furthermore, a competing endogenous RNA (ceRNA) network was built to find a LAMTOR5-AS1/hsa-miR-23a-3p/TP63 regulatory axis. Through experimental verification, it was found that the pyroptosis gene TP63 plays an important role in the regulation of osteosarcoma pyroptosis. The possible functions of PRGs in the TME, clinicopathological characteristics, and prognosis were established in our investigation of PRGs in OS. These findings may aid in our understanding of PRGs in OS as well as provide a novel way for prognostic evaluation and the creation of more effective immunotherapy treatments. Frontiers Media S.A. 2022-11-01 /pmc/articles/PMC9664215/ /pubmed/36389801 http://dx.doi.org/10.3389/fimmu.2022.974916 Text en Copyright © 2022 Han, Hu, Ding, Liu and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Han, Jun Hu, Yunxiang Ding, Shengqiang Liu, Sanmao Wang, Hong The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma |
title | The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma |
title_full | The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma |
title_fullStr | The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma |
title_full_unstemmed | The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma |
title_short | The analysis of the pyroptosis-related genes and hub gene TP63 ceRNA axis in osteosarcoma |
title_sort | analysis of the pyroptosis-related genes and hub gene tp63 cerna axis in osteosarcoma |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9664215/ https://www.ncbi.nlm.nih.gov/pubmed/36389801 http://dx.doi.org/10.3389/fimmu.2022.974916 |
work_keys_str_mv | AT hanjun theanalysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma AT huyunxiang theanalysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma AT dingshengqiang theanalysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma AT liusanmao theanalysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma AT wanghong theanalysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma AT hanjun analysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma AT huyunxiang analysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma AT dingshengqiang analysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma AT liusanmao analysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma AT wanghong analysisofthepyroptosisrelatedgenesandhubgenetp63cernaaxisinosteosarcoma |