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A radiomics-based decision support tool improves lung cancer diagnosis in combination with the Herder score in large lung nodules
BACKGROUND: Large lung nodules (≥15 mm) have the highest risk of malignancy, and may exhibit important differences in phenotypic or clinical characteristics to their smaller counterparts. Existing risk models do not stratify large nodules well. We aimed to develop and validate an integrated segmenta...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9664396/ https://www.ncbi.nlm.nih.gov/pubmed/36370635 http://dx.doi.org/10.1016/j.ebiom.2022.104344 |
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author | Hunter, Benjamin Chen, Mitchell Ratnakumar, Prashanthi Alemu, Esubalew Logan, Andrew Linton-Reid, Kristofer Tong, Daniel Senthivel, Nishanthi Bhamani, Amyn Bloch, Susannah Kemp, Samuel V. Boddy, Laura Jain, Sejal Gareeboo, Shafick Rawal, Bhavin Doran, Simon Navani, Neal Nair, Arjun Bunce, Catey Kaye, Stan Blackledge, Matthew Aboagye, Eric O. Devaraj, Anand Lee, Richard W. |
author_facet | Hunter, Benjamin Chen, Mitchell Ratnakumar, Prashanthi Alemu, Esubalew Logan, Andrew Linton-Reid, Kristofer Tong, Daniel Senthivel, Nishanthi Bhamani, Amyn Bloch, Susannah Kemp, Samuel V. Boddy, Laura Jain, Sejal Gareeboo, Shafick Rawal, Bhavin Doran, Simon Navani, Neal Nair, Arjun Bunce, Catey Kaye, Stan Blackledge, Matthew Aboagye, Eric O. Devaraj, Anand Lee, Richard W. |
author_sort | Hunter, Benjamin |
collection | PubMed |
description | BACKGROUND: Large lung nodules (≥15 mm) have the highest risk of malignancy, and may exhibit important differences in phenotypic or clinical characteristics to their smaller counterparts. Existing risk models do not stratify large nodules well. We aimed to develop and validate an integrated segmentation and classification pipeline, incorporating deep-learning and traditional radiomics, to classify large lung nodules according to cancer risk. METHODS: 502 patients from five U.K. centres were recruited to the large-nodule arm of the retrospective LIBRA study between July 2020 and April 2022. 838 CT scans were used for model development, split into training and test sets (70% and 30% respectively). An nnUNet model was trained to automate lung nodule segmentation. A radiomics signature was developed to classify nodules according to malignancy risk. Performance of the radiomics model, termed the large-nodule radiomics predictive vector (LN-RPV), was compared to three radiologists and the Brock and Herder scores. FINDINGS: 499 patients had technically evaluable scans (mean age 69 ± 11, 257 men, 242 women). In the test set of 252 scans, the nnUNet achieved a DICE score of 0.86, and the LN-RPV achieved an AUC of 0.83 (95% CI 0.77–0.88) for malignancy classification. Performance was higher than the median radiologist (AUC 0.75 [95% CI 0.70–0.81], DeLong p = 0.03). LN-RPV was robust to auto-segmentation (ICC 0.94). For baseline solid nodules in the test set (117 patients), LN-RPV had an AUC of 0.87 (95% CI 0.80–0.93) compared to 0.67 (95% CI 0.55–0.76, DeLong p = 0.002) for the Brock score and 0.83 (95% CI 0.75–0.90, DeLong p = 0.4) for the Herder score. In the international external test set (n = 151), LN-RPV maintained an AUC of 0.75 (95% CI 0.63–0.85). 18 out of 22 (82%) malignant nodules in the Herder 10–70% category in the test set were identified as high risk by the decision-support tool, and may have been referred for earlier intervention. INTERPRETATION: The model accurately segments and classifies large lung nodules, and may improve upon existing clinical models. FUNDING: This project represents independent research funded by: 1) Royal Marsden Partners Cancer Alliance, 2) the 10.13039/100016916Royal Marsden Cancer Charity, 3) the 10.13039/501100000272National Institute for Health Research (NIHR) Biomedical Research Centre at the Royal Marsden NHS Foundation Trust and The Institute of Cancer Research, London, 4) the 10.13039/501100000272National Institute for Health Research (NIHR) Biomedical Research Centre at 10.13039/501100000761Imperial College London, 5) 10.13039/501100000289Cancer Research UK (C309/A31316). |
format | Online Article Text |
id | pubmed-9664396 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-96643962022-11-15 A radiomics-based decision support tool improves lung cancer diagnosis in combination with the Herder score in large lung nodules Hunter, Benjamin Chen, Mitchell Ratnakumar, Prashanthi Alemu, Esubalew Logan, Andrew Linton-Reid, Kristofer Tong, Daniel Senthivel, Nishanthi Bhamani, Amyn Bloch, Susannah Kemp, Samuel V. Boddy, Laura Jain, Sejal Gareeboo, Shafick Rawal, Bhavin Doran, Simon Navani, Neal Nair, Arjun Bunce, Catey Kaye, Stan Blackledge, Matthew Aboagye, Eric O. Devaraj, Anand Lee, Richard W. eBioMedicine Articles BACKGROUND: Large lung nodules (≥15 mm) have the highest risk of malignancy, and may exhibit important differences in phenotypic or clinical characteristics to their smaller counterparts. Existing risk models do not stratify large nodules well. We aimed to develop and validate an integrated segmentation and classification pipeline, incorporating deep-learning and traditional radiomics, to classify large lung nodules according to cancer risk. METHODS: 502 patients from five U.K. centres were recruited to the large-nodule arm of the retrospective LIBRA study between July 2020 and April 2022. 838 CT scans were used for model development, split into training and test sets (70% and 30% respectively). An nnUNet model was trained to automate lung nodule segmentation. A radiomics signature was developed to classify nodules according to malignancy risk. Performance of the radiomics model, termed the large-nodule radiomics predictive vector (LN-RPV), was compared to three radiologists and the Brock and Herder scores. FINDINGS: 499 patients had technically evaluable scans (mean age 69 ± 11, 257 men, 242 women). In the test set of 252 scans, the nnUNet achieved a DICE score of 0.86, and the LN-RPV achieved an AUC of 0.83 (95% CI 0.77–0.88) for malignancy classification. Performance was higher than the median radiologist (AUC 0.75 [95% CI 0.70–0.81], DeLong p = 0.03). LN-RPV was robust to auto-segmentation (ICC 0.94). For baseline solid nodules in the test set (117 patients), LN-RPV had an AUC of 0.87 (95% CI 0.80–0.93) compared to 0.67 (95% CI 0.55–0.76, DeLong p = 0.002) for the Brock score and 0.83 (95% CI 0.75–0.90, DeLong p = 0.4) for the Herder score. In the international external test set (n = 151), LN-RPV maintained an AUC of 0.75 (95% CI 0.63–0.85). 18 out of 22 (82%) malignant nodules in the Herder 10–70% category in the test set were identified as high risk by the decision-support tool, and may have been referred for earlier intervention. INTERPRETATION: The model accurately segments and classifies large lung nodules, and may improve upon existing clinical models. FUNDING: This project represents independent research funded by: 1) Royal Marsden Partners Cancer Alliance, 2) the 10.13039/100016916Royal Marsden Cancer Charity, 3) the 10.13039/501100000272National Institute for Health Research (NIHR) Biomedical Research Centre at the Royal Marsden NHS Foundation Trust and The Institute of Cancer Research, London, 4) the 10.13039/501100000272National Institute for Health Research (NIHR) Biomedical Research Centre at 10.13039/501100000761Imperial College London, 5) 10.13039/501100000289Cancer Research UK (C309/A31316). Elsevier 2022-11-10 /pmc/articles/PMC9664396/ /pubmed/36370635 http://dx.doi.org/10.1016/j.ebiom.2022.104344 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Articles Hunter, Benjamin Chen, Mitchell Ratnakumar, Prashanthi Alemu, Esubalew Logan, Andrew Linton-Reid, Kristofer Tong, Daniel Senthivel, Nishanthi Bhamani, Amyn Bloch, Susannah Kemp, Samuel V. Boddy, Laura Jain, Sejal Gareeboo, Shafick Rawal, Bhavin Doran, Simon Navani, Neal Nair, Arjun Bunce, Catey Kaye, Stan Blackledge, Matthew Aboagye, Eric O. Devaraj, Anand Lee, Richard W. A radiomics-based decision support tool improves lung cancer diagnosis in combination with the Herder score in large lung nodules |
title | A radiomics-based decision support tool improves lung cancer diagnosis in combination with the Herder score in large lung nodules |
title_full | A radiomics-based decision support tool improves lung cancer diagnosis in combination with the Herder score in large lung nodules |
title_fullStr | A radiomics-based decision support tool improves lung cancer diagnosis in combination with the Herder score in large lung nodules |
title_full_unstemmed | A radiomics-based decision support tool improves lung cancer diagnosis in combination with the Herder score in large lung nodules |
title_short | A radiomics-based decision support tool improves lung cancer diagnosis in combination with the Herder score in large lung nodules |
title_sort | radiomics-based decision support tool improves lung cancer diagnosis in combination with the herder score in large lung nodules |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9664396/ https://www.ncbi.nlm.nih.gov/pubmed/36370635 http://dx.doi.org/10.1016/j.ebiom.2022.104344 |
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