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Imaging-based representation and stratification of intra-tumor heterogeneity via tree-edit distance

Personalized medicine is the future of medical practice. In oncology, tumor heterogeneity assessment represents a pivotal step for effective treatment planning and prognosis prediction. Despite new procedures for DNA sequencing and analysis, non-invasive methods for tumor characterization are needed...

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Autores principales: Cavinato, Lara, Pegoraro, Matteo, Ragni, Alessandra, Sollini, Martina, Erba, Paola Anna, Ieva, Francesca
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9666477/
https://www.ncbi.nlm.nih.gov/pubmed/36380083
http://dx.doi.org/10.1038/s41598-022-23752-2
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author Cavinato, Lara
Pegoraro, Matteo
Ragni, Alessandra
Sollini, Martina
Erba, Paola Anna
Ieva, Francesca
author_facet Cavinato, Lara
Pegoraro, Matteo
Ragni, Alessandra
Sollini, Martina
Erba, Paola Anna
Ieva, Francesca
author_sort Cavinato, Lara
collection PubMed
description Personalized medicine is the future of medical practice. In oncology, tumor heterogeneity assessment represents a pivotal step for effective treatment planning and prognosis prediction. Despite new procedures for DNA sequencing and analysis, non-invasive methods for tumor characterization are needed to impact on daily routine. On purpose, imaging texture analysis is rapidly scaling, holding the promise to surrogate histopathological assessment of tumor lesions. In this work, we propose a tree-based representation strategy for describing intra-tumor heterogeneity of patients affected by metastatic cancer. We leverage radiomics information extracted from PET/CT imaging and we provide an exhaustive and easily readable summary of the disease spreading. We exploit this novel patient representation to perform cancer subtyping according to hierarchical clustering technique. To this purpose, a new heterogeneity-based distance between trees is defined and applied to a case study of prostate cancer. Clusters interpretation is explored in terms of concordance with severity status, tumor burden and biological characteristics. Results are promising, as the proposed method outperforms current literature approaches. Ultimately, the proposed method draws a general analysis framework that would allow to extract knowledge from daily acquired imaging data of patients and provide insights for effective treatment planning.
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spelling pubmed-96664772022-11-17 Imaging-based representation and stratification of intra-tumor heterogeneity via tree-edit distance Cavinato, Lara Pegoraro, Matteo Ragni, Alessandra Sollini, Martina Erba, Paola Anna Ieva, Francesca Sci Rep Article Personalized medicine is the future of medical practice. In oncology, tumor heterogeneity assessment represents a pivotal step for effective treatment planning and prognosis prediction. Despite new procedures for DNA sequencing and analysis, non-invasive methods for tumor characterization are needed to impact on daily routine. On purpose, imaging texture analysis is rapidly scaling, holding the promise to surrogate histopathological assessment of tumor lesions. In this work, we propose a tree-based representation strategy for describing intra-tumor heterogeneity of patients affected by metastatic cancer. We leverage radiomics information extracted from PET/CT imaging and we provide an exhaustive and easily readable summary of the disease spreading. We exploit this novel patient representation to perform cancer subtyping according to hierarchical clustering technique. To this purpose, a new heterogeneity-based distance between trees is defined and applied to a case study of prostate cancer. Clusters interpretation is explored in terms of concordance with severity status, tumor burden and biological characteristics. Results are promising, as the proposed method outperforms current literature approaches. Ultimately, the proposed method draws a general analysis framework that would allow to extract knowledge from daily acquired imaging data of patients and provide insights for effective treatment planning. Nature Publishing Group UK 2022-11-15 /pmc/articles/PMC9666477/ /pubmed/36380083 http://dx.doi.org/10.1038/s41598-022-23752-2 Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Cavinato, Lara
Pegoraro, Matteo
Ragni, Alessandra
Sollini, Martina
Erba, Paola Anna
Ieva, Francesca
Imaging-based representation and stratification of intra-tumor heterogeneity via tree-edit distance
title Imaging-based representation and stratification of intra-tumor heterogeneity via tree-edit distance
title_full Imaging-based representation and stratification of intra-tumor heterogeneity via tree-edit distance
title_fullStr Imaging-based representation and stratification of intra-tumor heterogeneity via tree-edit distance
title_full_unstemmed Imaging-based representation and stratification of intra-tumor heterogeneity via tree-edit distance
title_short Imaging-based representation and stratification of intra-tumor heterogeneity via tree-edit distance
title_sort imaging-based representation and stratification of intra-tumor heterogeneity via tree-edit distance
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9666477/
https://www.ncbi.nlm.nih.gov/pubmed/36380083
http://dx.doi.org/10.1038/s41598-022-23752-2
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