Cargando…

3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques

In this paper we present a structurally-complex biomimetic scattering structure, fabricated with two-photon polymerization, and utilize this object in order to benchmark a computational imaging system. The phantom allows to tailor the scattering by modifying its degrees of freedom i.e. refractive in...

Descripción completa

Detalles Bibliográficos
Autores principales: Krauze, Wojciech, Kuś, Arkadiusz, Ziemczonok, Michał, Haimowitz, Max, Chowdhury, Shwetadwip, Kujawińska, Małgorzata
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9666505/
https://www.ncbi.nlm.nih.gov/pubmed/36380058
http://dx.doi.org/10.1038/s41598-022-24193-7
_version_ 1784831521795866624
author Krauze, Wojciech
Kuś, Arkadiusz
Ziemczonok, Michał
Haimowitz, Max
Chowdhury, Shwetadwip
Kujawińska, Małgorzata
author_facet Krauze, Wojciech
Kuś, Arkadiusz
Ziemczonok, Michał
Haimowitz, Max
Chowdhury, Shwetadwip
Kujawińska, Małgorzata
author_sort Krauze, Wojciech
collection PubMed
description In this paper we present a structurally-complex biomimetic scattering structure, fabricated with two-photon polymerization, and utilize this object in order to benchmark a computational imaging system. The phantom allows to tailor the scattering by modifying its degrees of freedom i.e. refractive index contrast and scattering layer dimensions and incorporates a 3D imaging quality test, representing a single cell within tissue. While the sample may be used with multiple 3D microscopy techniques, we demonstrate the impact of scattering on three tomographic phase microscopy (TPM) reconstruction methods. One of these methods assumes the sample to be weak-scattering, while the other two take multiple scattering into account. The study is performed at two wavelengths (visible and near-infrared), which serve as a scaling factor for the scattering phenomenon. We find that changing the wavelength from visible into near-infrared impacts the applicability of TPM reconstruction methods. As a result of reduced scattering in near-infrared region, the multiple-scattering-oriented techniques perform in fact worse than a method aimed for weak-scattering samples. This implies a necessity of selecting proper approach depending on sample’s scattering characteristics even in case of subtle changes in the object-light interaction.
format Online
Article
Text
id pubmed-9666505
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-96665052022-11-17 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques Krauze, Wojciech Kuś, Arkadiusz Ziemczonok, Michał Haimowitz, Max Chowdhury, Shwetadwip Kujawińska, Małgorzata Sci Rep Article In this paper we present a structurally-complex biomimetic scattering structure, fabricated with two-photon polymerization, and utilize this object in order to benchmark a computational imaging system. The phantom allows to tailor the scattering by modifying its degrees of freedom i.e. refractive index contrast and scattering layer dimensions and incorporates a 3D imaging quality test, representing a single cell within tissue. While the sample may be used with multiple 3D microscopy techniques, we demonstrate the impact of scattering on three tomographic phase microscopy (TPM) reconstruction methods. One of these methods assumes the sample to be weak-scattering, while the other two take multiple scattering into account. The study is performed at two wavelengths (visible and near-infrared), which serve as a scaling factor for the scattering phenomenon. We find that changing the wavelength from visible into near-infrared impacts the applicability of TPM reconstruction methods. As a result of reduced scattering in near-infrared region, the multiple-scattering-oriented techniques perform in fact worse than a method aimed for weak-scattering samples. This implies a necessity of selecting proper approach depending on sample’s scattering characteristics even in case of subtle changes in the object-light interaction. Nature Publishing Group UK 2022-11-15 /pmc/articles/PMC9666505/ /pubmed/36380058 http://dx.doi.org/10.1038/s41598-022-24193-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Krauze, Wojciech
Kuś, Arkadiusz
Ziemczonok, Michał
Haimowitz, Max
Chowdhury, Shwetadwip
Kujawińska, Małgorzata
3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques
title 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques
title_full 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques
title_fullStr 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques
title_full_unstemmed 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques
title_short 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques
title_sort 3d scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9666505/
https://www.ncbi.nlm.nih.gov/pubmed/36380058
http://dx.doi.org/10.1038/s41598-022-24193-7
work_keys_str_mv AT krauzewojciech 3dscatteringmicrophantomsampletoassessquantitativeaccuracyintomographicphasemicroscopytechniques
AT kusarkadiusz 3dscatteringmicrophantomsampletoassessquantitativeaccuracyintomographicphasemicroscopytechniques
AT ziemczonokmichał 3dscatteringmicrophantomsampletoassessquantitativeaccuracyintomographicphasemicroscopytechniques
AT haimowitzmax 3dscatteringmicrophantomsampletoassessquantitativeaccuracyintomographicphasemicroscopytechniques
AT chowdhuryshwetadwip 3dscatteringmicrophantomsampletoassessquantitativeaccuracyintomographicphasemicroscopytechniques
AT kujawinskamałgorzata 3dscatteringmicrophantomsampletoassessquantitativeaccuracyintomographicphasemicroscopytechniques