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3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques
In this paper we present a structurally-complex biomimetic scattering structure, fabricated with two-photon polymerization, and utilize this object in order to benchmark a computational imaging system. The phantom allows to tailor the scattering by modifying its degrees of freedom i.e. refractive in...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9666505/ https://www.ncbi.nlm.nih.gov/pubmed/36380058 http://dx.doi.org/10.1038/s41598-022-24193-7 |
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author | Krauze, Wojciech Kuś, Arkadiusz Ziemczonok, Michał Haimowitz, Max Chowdhury, Shwetadwip Kujawińska, Małgorzata |
author_facet | Krauze, Wojciech Kuś, Arkadiusz Ziemczonok, Michał Haimowitz, Max Chowdhury, Shwetadwip Kujawińska, Małgorzata |
author_sort | Krauze, Wojciech |
collection | PubMed |
description | In this paper we present a structurally-complex biomimetic scattering structure, fabricated with two-photon polymerization, and utilize this object in order to benchmark a computational imaging system. The phantom allows to tailor the scattering by modifying its degrees of freedom i.e. refractive index contrast and scattering layer dimensions and incorporates a 3D imaging quality test, representing a single cell within tissue. While the sample may be used with multiple 3D microscopy techniques, we demonstrate the impact of scattering on three tomographic phase microscopy (TPM) reconstruction methods. One of these methods assumes the sample to be weak-scattering, while the other two take multiple scattering into account. The study is performed at two wavelengths (visible and near-infrared), which serve as a scaling factor for the scattering phenomenon. We find that changing the wavelength from visible into near-infrared impacts the applicability of TPM reconstruction methods. As a result of reduced scattering in near-infrared region, the multiple-scattering-oriented techniques perform in fact worse than a method aimed for weak-scattering samples. This implies a necessity of selecting proper approach depending on sample’s scattering characteristics even in case of subtle changes in the object-light interaction. |
format | Online Article Text |
id | pubmed-9666505 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-96665052022-11-17 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques Krauze, Wojciech Kuś, Arkadiusz Ziemczonok, Michał Haimowitz, Max Chowdhury, Shwetadwip Kujawińska, Małgorzata Sci Rep Article In this paper we present a structurally-complex biomimetic scattering structure, fabricated with two-photon polymerization, and utilize this object in order to benchmark a computational imaging system. The phantom allows to tailor the scattering by modifying its degrees of freedom i.e. refractive index contrast and scattering layer dimensions and incorporates a 3D imaging quality test, representing a single cell within tissue. While the sample may be used with multiple 3D microscopy techniques, we demonstrate the impact of scattering on three tomographic phase microscopy (TPM) reconstruction methods. One of these methods assumes the sample to be weak-scattering, while the other two take multiple scattering into account. The study is performed at two wavelengths (visible and near-infrared), which serve as a scaling factor for the scattering phenomenon. We find that changing the wavelength from visible into near-infrared impacts the applicability of TPM reconstruction methods. As a result of reduced scattering in near-infrared region, the multiple-scattering-oriented techniques perform in fact worse than a method aimed for weak-scattering samples. This implies a necessity of selecting proper approach depending on sample’s scattering characteristics even in case of subtle changes in the object-light interaction. Nature Publishing Group UK 2022-11-15 /pmc/articles/PMC9666505/ /pubmed/36380058 http://dx.doi.org/10.1038/s41598-022-24193-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Krauze, Wojciech Kuś, Arkadiusz Ziemczonok, Michał Haimowitz, Max Chowdhury, Shwetadwip Kujawińska, Małgorzata 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques |
title | 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques |
title_full | 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques |
title_fullStr | 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques |
title_full_unstemmed | 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques |
title_short | 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques |
title_sort | 3d scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9666505/ https://www.ncbi.nlm.nih.gov/pubmed/36380058 http://dx.doi.org/10.1038/s41598-022-24193-7 |
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