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ResNet and MaxEnt modeling for quality assessment of Wolfiporia cocos based on FT-NIR fingerprints

As a fungus with both medicinal and edible value, Wolfiporia cocos (F. A. Wolf) Ryvarden & Gilb. has drawn more public attention. Chemical components’ content fluctuates in wild and cultivated W. cocos, whereas the accumulation ability of chemical components in different parts is different. In o...

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Autores principales: Zhang, YanYing, Shen, Tao, Zuo, ZhiTian, Wang, YuanZhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9666765/
https://www.ncbi.nlm.nih.gov/pubmed/36407623
http://dx.doi.org/10.3389/fpls.2022.996069
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author Zhang, YanYing
Shen, Tao
Zuo, ZhiTian
Wang, YuanZhong
author_facet Zhang, YanYing
Shen, Tao
Zuo, ZhiTian
Wang, YuanZhong
author_sort Zhang, YanYing
collection PubMed
description As a fungus with both medicinal and edible value, Wolfiporia cocos (F. A. Wolf) Ryvarden & Gilb. has drawn more public attention. Chemical components’ content fluctuates in wild and cultivated W. cocos, whereas the accumulation ability of chemical components in different parts is different. In order to perform a quality assessment of W. cocos, we proposed a comprehensive method which was mainly realized by Fourier transform near-infrared (FT-NIR) spectroscopy and ultra-fast liquid chromatography (UFLC). A qualitative analysis means was built a residual convolutional neural network (ResNet) to recognize synchronous two-dimensional correlation spectroscopy (2DCOS) images. It can rapidly identify samples from wild and cultivated W. cocos in different parts. As a quantitative analysis method, UFLC was used to determine the contents of three triterpene acids in 547 samples. The results showed that a simultaneous qualitative and quantitative strategy could accurately evaluate the quality of W. cocos. The accuracy of ResNet models combined synchronous FT-NIR 2DCOS in identifying wild and cultivated W. cocos in different parts was as high as 100%. The contents of three triterpene acids in Poriae Cutis were higher than that in Poria, and the one with wild Poriae Cutis was the highest. In addition, the suitable habitat plays a crucial role in the quality of W. cocos. The maximum entropy (MaxEnt) model is a common method to predict the suitable habitat area for W. cocos under the current climate. Through the results, we found that suitable habitats were mostly situated in Yunnan Province of China, which accounted for approximately 49% of the total suitable habitat area of China. The research results not only pave the way for the rational planting in Yunnan Province of China and resource utilization of W. cocos, but also provide a basis for quality assessment of medicinal fungi.
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spelling pubmed-96667652022-11-17 ResNet and MaxEnt modeling for quality assessment of Wolfiporia cocos based on FT-NIR fingerprints Zhang, YanYing Shen, Tao Zuo, ZhiTian Wang, YuanZhong Front Plant Sci Plant Science As a fungus with both medicinal and edible value, Wolfiporia cocos (F. A. Wolf) Ryvarden & Gilb. has drawn more public attention. Chemical components’ content fluctuates in wild and cultivated W. cocos, whereas the accumulation ability of chemical components in different parts is different. In order to perform a quality assessment of W. cocos, we proposed a comprehensive method which was mainly realized by Fourier transform near-infrared (FT-NIR) spectroscopy and ultra-fast liquid chromatography (UFLC). A qualitative analysis means was built a residual convolutional neural network (ResNet) to recognize synchronous two-dimensional correlation spectroscopy (2DCOS) images. It can rapidly identify samples from wild and cultivated W. cocos in different parts. As a quantitative analysis method, UFLC was used to determine the contents of three triterpene acids in 547 samples. The results showed that a simultaneous qualitative and quantitative strategy could accurately evaluate the quality of W. cocos. The accuracy of ResNet models combined synchronous FT-NIR 2DCOS in identifying wild and cultivated W. cocos in different parts was as high as 100%. The contents of three triterpene acids in Poriae Cutis were higher than that in Poria, and the one with wild Poriae Cutis was the highest. In addition, the suitable habitat plays a crucial role in the quality of W. cocos. The maximum entropy (MaxEnt) model is a common method to predict the suitable habitat area for W. cocos under the current climate. Through the results, we found that suitable habitats were mostly situated in Yunnan Province of China, which accounted for approximately 49% of the total suitable habitat area of China. The research results not only pave the way for the rational planting in Yunnan Province of China and resource utilization of W. cocos, but also provide a basis for quality assessment of medicinal fungi. Frontiers Media S.A. 2022-11-02 /pmc/articles/PMC9666765/ /pubmed/36407623 http://dx.doi.org/10.3389/fpls.2022.996069 Text en Copyright © 2022 Zhang, Shen, Zuo and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Zhang, YanYing
Shen, Tao
Zuo, ZhiTian
Wang, YuanZhong
ResNet and MaxEnt modeling for quality assessment of Wolfiporia cocos based on FT-NIR fingerprints
title ResNet and MaxEnt modeling for quality assessment of Wolfiporia cocos based on FT-NIR fingerprints
title_full ResNet and MaxEnt modeling for quality assessment of Wolfiporia cocos based on FT-NIR fingerprints
title_fullStr ResNet and MaxEnt modeling for quality assessment of Wolfiporia cocos based on FT-NIR fingerprints
title_full_unstemmed ResNet and MaxEnt modeling for quality assessment of Wolfiporia cocos based on FT-NIR fingerprints
title_short ResNet and MaxEnt modeling for quality assessment of Wolfiporia cocos based on FT-NIR fingerprints
title_sort resnet and maxent modeling for quality assessment of wolfiporia cocos based on ft-nir fingerprints
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9666765/
https://www.ncbi.nlm.nih.gov/pubmed/36407623
http://dx.doi.org/10.3389/fpls.2022.996069
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