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Combined brain network topological metrics with machine learning algorithms to identify essential tremor

BACKGROUND AND OBJECTIVE: Essential tremor (ET) is a common movement syndrome, and the pathogenesis mechanisms, especially the brain network topological changes in ET are still unclear. The combination of graph theory (GT) analysis with machine learning (ML) algorithms provides a promising way to id...

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Autores principales: Li, Qin, Tao, Li, Xiao, Pan, Gui, Honge, Xu, Bintao, Zhang, Xueyan, Zhang, Xiaoyu, Chen, Huiyue, Wang, Hansheng, He, Wanlin, Lv, Fajin, Cheng, Oumei, Luo, Jing, Man, Yun, Xiao, Zheng, Fang, Weidong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9667093/
https://www.ncbi.nlm.nih.gov/pubmed/36408403
http://dx.doi.org/10.3389/fnins.2022.1035153
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author Li, Qin
Tao, Li
Xiao, Pan
Gui, Honge
Xu, Bintao
Zhang, Xueyan
Zhang, Xiaoyu
Chen, Huiyue
Wang, Hansheng
He, Wanlin
Lv, Fajin
Cheng, Oumei
Luo, Jing
Man, Yun
Xiao, Zheng
Fang, Weidong
author_facet Li, Qin
Tao, Li
Xiao, Pan
Gui, Honge
Xu, Bintao
Zhang, Xueyan
Zhang, Xiaoyu
Chen, Huiyue
Wang, Hansheng
He, Wanlin
Lv, Fajin
Cheng, Oumei
Luo, Jing
Man, Yun
Xiao, Zheng
Fang, Weidong
author_sort Li, Qin
collection PubMed
description BACKGROUND AND OBJECTIVE: Essential tremor (ET) is a common movement syndrome, and the pathogenesis mechanisms, especially the brain network topological changes in ET are still unclear. The combination of graph theory (GT) analysis with machine learning (ML) algorithms provides a promising way to identify ET from healthy controls (HCs) at the individual level, and further help to reveal the topological pathogenesis in ET. METHODS: Resting-state functional magnetic resonance imaging (fMRI) data were obtained from 101 ET and 105 HCs. The topological properties were analyzed by using GT analysis, and the topological metrics under every single threshold and the area under the curve (AUC) of all thresholds were used as features. Then a Mann-Whitney U-test and least absolute shrinkage and selection operator (LASSO) were conducted to feature dimensionality reduction. Four ML algorithms were adopted to identify ET from HCs. The mean accuracy, mean balanced accuracy, mean sensitivity, mean specificity, and mean AUC were used to evaluate the classification performance. In addition, correlation analysis was carried out between selected topological features and clinical tremor characteristics. RESULTS: All classifiers achieved good classification performance. The mean accuracy of Support vector machine (SVM), logistic regression (LR), random forest (RF), and naïve bayes (NB) was 84.65, 85.03, 84.85, and 76.31%, respectively. LR classifier achieved the best classification performance with 85.03% mean accuracy, 83.97% sensitivity, and an AUC of 0.924. Correlation analysis results showed that 2 topological features negatively and 1 positively correlated with tremor severity. CONCLUSION: These results demonstrated that combining topological metrics with ML algorithms could not only achieve high classification accuracy for discrimination ET from HCs but also help us to reveal the potential topological pathogenesis of ET.
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spelling pubmed-96670932022-11-17 Combined brain network topological metrics with machine learning algorithms to identify essential tremor Li, Qin Tao, Li Xiao, Pan Gui, Honge Xu, Bintao Zhang, Xueyan Zhang, Xiaoyu Chen, Huiyue Wang, Hansheng He, Wanlin Lv, Fajin Cheng, Oumei Luo, Jing Man, Yun Xiao, Zheng Fang, Weidong Front Neurosci Neuroscience BACKGROUND AND OBJECTIVE: Essential tremor (ET) is a common movement syndrome, and the pathogenesis mechanisms, especially the brain network topological changes in ET are still unclear. The combination of graph theory (GT) analysis with machine learning (ML) algorithms provides a promising way to identify ET from healthy controls (HCs) at the individual level, and further help to reveal the topological pathogenesis in ET. METHODS: Resting-state functional magnetic resonance imaging (fMRI) data were obtained from 101 ET and 105 HCs. The topological properties were analyzed by using GT analysis, and the topological metrics under every single threshold and the area under the curve (AUC) of all thresholds were used as features. Then a Mann-Whitney U-test and least absolute shrinkage and selection operator (LASSO) were conducted to feature dimensionality reduction. Four ML algorithms were adopted to identify ET from HCs. The mean accuracy, mean balanced accuracy, mean sensitivity, mean specificity, and mean AUC were used to evaluate the classification performance. In addition, correlation analysis was carried out between selected topological features and clinical tremor characteristics. RESULTS: All classifiers achieved good classification performance. The mean accuracy of Support vector machine (SVM), logistic regression (LR), random forest (RF), and naïve bayes (NB) was 84.65, 85.03, 84.85, and 76.31%, respectively. LR classifier achieved the best classification performance with 85.03% mean accuracy, 83.97% sensitivity, and an AUC of 0.924. Correlation analysis results showed that 2 topological features negatively and 1 positively correlated with tremor severity. CONCLUSION: These results demonstrated that combining topological metrics with ML algorithms could not only achieve high classification accuracy for discrimination ET from HCs but also help us to reveal the potential topological pathogenesis of ET. Frontiers Media S.A. 2022-11-02 /pmc/articles/PMC9667093/ /pubmed/36408403 http://dx.doi.org/10.3389/fnins.2022.1035153 Text en Copyright © 2022 Li, Tao, Xiao, Gui, Xu, Zhang, Zhang, Chen, Wang, He, Lv, Cheng, Luo, Man, Xiao and Fang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Li, Qin
Tao, Li
Xiao, Pan
Gui, Honge
Xu, Bintao
Zhang, Xueyan
Zhang, Xiaoyu
Chen, Huiyue
Wang, Hansheng
He, Wanlin
Lv, Fajin
Cheng, Oumei
Luo, Jing
Man, Yun
Xiao, Zheng
Fang, Weidong
Combined brain network topological metrics with machine learning algorithms to identify essential tremor
title Combined brain network topological metrics with machine learning algorithms to identify essential tremor
title_full Combined brain network topological metrics with machine learning algorithms to identify essential tremor
title_fullStr Combined brain network topological metrics with machine learning algorithms to identify essential tremor
title_full_unstemmed Combined brain network topological metrics with machine learning algorithms to identify essential tremor
title_short Combined brain network topological metrics with machine learning algorithms to identify essential tremor
title_sort combined brain network topological metrics with machine learning algorithms to identify essential tremor
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9667093/
https://www.ncbi.nlm.nih.gov/pubmed/36408403
http://dx.doi.org/10.3389/fnins.2022.1035153
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