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Evaluation of word embedding models to extract and predict surgical data in breast cancer

BACKGROUND: Decisions in healthcare usually rely on the goodness and completeness of data that could be coupled with heuristics to improve the decision process itself. However, this is often an incomplete process. Structured interviews denominated Delphi surveys investigate experts' opinions an...

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Autores principales: Sgroi, Giuseppe, Russo, Giulia, Maglia, Anna, Catanuto, Giuseppe, Barry, Peter, Karakatsanis, Andreas, Rocco, Nicola, Pappalardo, Francesco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9667561/
https://www.ncbi.nlm.nih.gov/pubmed/36384559
http://dx.doi.org/10.1186/s12859-022-05038-6
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author Sgroi, Giuseppe
Russo, Giulia
Maglia, Anna
Catanuto, Giuseppe
Barry, Peter
Karakatsanis, Andreas
Rocco, Nicola
Pappalardo, Francesco
author_facet Sgroi, Giuseppe
Russo, Giulia
Maglia, Anna
Catanuto, Giuseppe
Barry, Peter
Karakatsanis, Andreas
Rocco, Nicola
Pappalardo, Francesco
author_sort Sgroi, Giuseppe
collection PubMed
description BACKGROUND: Decisions in healthcare usually rely on the goodness and completeness of data that could be coupled with heuristics to improve the decision process itself. However, this is often an incomplete process. Structured interviews denominated Delphi surveys investigate experts' opinions and solve by consensus complex matters like those underlying surgical decision-making. Natural Language Processing (NLP) is a field of study that combines computer science, artificial intelligence, and linguistics. NLP can then be used as a valuable help in building a correct context in surgical data, contributing to the amelioration of surgical decision-making. RESULTS: We applied NLP coupled with machine learning approaches to predict the context (words) owning high accuracy from the words nearest to Delphi surveys, used as input. CONCLUSIONS: The proposed methodology has increased the usefulness of Delphi surveys favoring the extraction of keywords that can represent a specific clinical context. It permits the characterization of the clinical context suggesting words for the evaluation process of the data. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-022-05038-6.
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spelling pubmed-96675612022-11-17 Evaluation of word embedding models to extract and predict surgical data in breast cancer Sgroi, Giuseppe Russo, Giulia Maglia, Anna Catanuto, Giuseppe Barry, Peter Karakatsanis, Andreas Rocco, Nicola Pappalardo, Francesco BMC Bioinformatics Research BACKGROUND: Decisions in healthcare usually rely on the goodness and completeness of data that could be coupled with heuristics to improve the decision process itself. However, this is often an incomplete process. Structured interviews denominated Delphi surveys investigate experts' opinions and solve by consensus complex matters like those underlying surgical decision-making. Natural Language Processing (NLP) is a field of study that combines computer science, artificial intelligence, and linguistics. NLP can then be used as a valuable help in building a correct context in surgical data, contributing to the amelioration of surgical decision-making. RESULTS: We applied NLP coupled with machine learning approaches to predict the context (words) owning high accuracy from the words nearest to Delphi surveys, used as input. CONCLUSIONS: The proposed methodology has increased the usefulness of Delphi surveys favoring the extraction of keywords that can represent a specific clinical context. It permits the characterization of the clinical context suggesting words for the evaluation process of the data. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-022-05038-6. BioMed Central 2022-11-16 /pmc/articles/PMC9667561/ /pubmed/36384559 http://dx.doi.org/10.1186/s12859-022-05038-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Sgroi, Giuseppe
Russo, Giulia
Maglia, Anna
Catanuto, Giuseppe
Barry, Peter
Karakatsanis, Andreas
Rocco, Nicola
Pappalardo, Francesco
Evaluation of word embedding models to extract and predict surgical data in breast cancer
title Evaluation of word embedding models to extract and predict surgical data in breast cancer
title_full Evaluation of word embedding models to extract and predict surgical data in breast cancer
title_fullStr Evaluation of word embedding models to extract and predict surgical data in breast cancer
title_full_unstemmed Evaluation of word embedding models to extract and predict surgical data in breast cancer
title_short Evaluation of word embedding models to extract and predict surgical data in breast cancer
title_sort evaluation of word embedding models to extract and predict surgical data in breast cancer
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9667561/
https://www.ncbi.nlm.nih.gov/pubmed/36384559
http://dx.doi.org/10.1186/s12859-022-05038-6
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